Fragaria vesca (woodland strawberry): 101307921
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Entry
101307921 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101307921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101307921
03036 Chromosome and associated proteins [BR:
fve03036
]
101307921
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101307921
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101307921
mRNA degradation factors
5'-3' decay
Decapping complex
101307921
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101307921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
IATP
Motif
Other DBs
NCBI-GeneID:
101307921
NCBI-ProteinID:
XP_004306806
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Position
LG7:complement(5359778..5366655)
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AA seq
510 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGGGMNANPPFQSRPPHQQQQYVQRNLLPNQQQQQQYYQQQQ
QHHHQQQQHHQQQQQQWLRRGQLGGSTSADSAVDEVEKTVQSEAVDPSSQDWKARLKIPP
ADTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARA
KNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTG
GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE
QLIRFLPSNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQK
VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFR
NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE
DRFNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaacagagggaggtacccgccggggatcggagccgggcgcggcggcggc
ggaggcatgaatgcgaacccgccgtttcagtcgcgaccgccgcaccagcagcagcaatac
gtacagaggaatctgttgccgaaccaacagcaacagcagcagtactatcagcaacagcag
cagcaccatcaccaacagcagcagcatcaccagcagcagcagcagcagtggctcaggagg
ggccagttgggtggcagcaccagtgccgattccgccgtcgacgaggttgagaagactgtg
cagtctgaggccgtcgatccaagttcgcaagattggaaggcaaggttaaagattcctcca
gctgatacacgcttcagaacagaggatgttactgcaactaaaggaaatgagttcgaggac
tactttttgaaacgtgagctactgatgggaatatatgagaagggatttgaaagaccatct
cctattcaggaagaaagtataccaattgctttaactggtagtgatattcttgctagagct
aaaaatggaacggggaaaacggctgcattttgcattcctgctttggaaaaaattgatcaa
gataacaacgtaattcaagttgttatactggttccaacccgtgagttggcccttcaaaca
tctcaagtctgtaaggagctagggaagcatttaaaaattcaagttatggttactactgga
ggtaccagcttaaaggacgatatcatgcgtttgtaccaaccagttcacttactcgttgga
actcctggaagaattttagatctttctaagaaaggtgtttgcatcttgaaagactgctct
atgcttgttatggacgaggctgataaacttttgtctccggagtttcaaccttcagtggag
cagcttatccgcttcttgccttcaaatcggcaaattttgatgttttcagctacatttcct
gttactgtcaaggacttcaaagatagatatctgcacaagccttacgttatcaaccttatg
gatgagcttactctaaagggtatcacacagttctatgcttttgtcgaggagagacagaaa
gttcactgcctaaacactcttttctccaagcttcaaataaaccagtcaataatattctgc
aactctgtgaatcgggtggagttattggccaagaaaattacagaactgggctattcatgc
ttttatattcatgcaaagatgctgcaagaccatcgtaacagagtattccatgactttcgt
aacggcgcatgcagaaatcttgtttgtactgacctatttacaagaggaatagatattcaa
gcggtcaatgttgtcattaactttgattttccaaagaactcagagacatatctgcacagg
gttggacgatctggaaggtttggacaccttggtttggctgtgaatttgatcacctatgag
gaccgtttcaacttgtatagaattgagcaagaacttggcactgagatcaagcaaattcct
ccgcatattgatcaggcaatttattgccggtga
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