Fragaria vesca (woodland strawberry): 101307937
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Entry
101307937 CDS
T02666
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101307937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101307937
Membrane trafficking [BR:
fve04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101307937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
TPR_VPS8_2
VPS8_N
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40
Beta-prop_EML
WDR55
Beta-prop_RIG_2nd
WD40_Gbeta
ANAPC4_WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_THOC3
Beta-prop_HPS5
Beta-prop_Aladin
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
101307937
NCBI-ProteinID:
XP_004308276
LinkDB
All DBs
Position
LG7:complement(2823263..2832762)
Genome browser
AA seq
1929 aa
AA seq
DB search
MTNKLTQPEPQLAMELDLDSFLTSHLSSDSDSDADLASVPRRTIDEILNDTDSSTSPSPS
SSPRSSSALSQFLASDPKPPQTDAVSVASARSSQLEEKSVRPGLNLYSRARSGDFPDDQV
GRVSRPSPWLLGGVRTNAKPGAALAAAAAASRSMPTPHAAAIKSRRSAGSGSFQKAVEAV
VAEELGVRSEDNNAVGSETTAMSSNGAEEGFGGELGRKDEVLERESVVDEVSAGNAGAEE
VSSVSFDKNSMNLDGNDGKDNEFDENVEVAVESNPELDENSPSPRRSDVEDEPTGEDQQH
FVGNDDNDEVGDNDDGIKDGDDHFDDEDGALGTSITQLVEERMEQLESRRVSKKAEKKLR
KPLEIAEELEKKQASTALHWEEGAAAQPMRLEGVRRGSTTLGYFDVDAKNTITRTLSAPA
LRRDHGSPQVLGVHSNYIAIGMSRGVVLVVPSKYSPHNADNMDAKLLFLGLQGERSYAAV
TSISFNQQGDLLLAGYADGHITVWDVQRASAAKVITGEHTAPVVHTFFLGHDSQVTRNFK
AVTGDSKGLVLLHSFSVVPLLNRFSIKTQCLLDGQKTGTTLSASPLIIDESCGGSSLSSQ
GNAMGSGSSIGGMMGGVVGADAGWKLFNEGSSLVEEGVVVFVTHQNALVVRLTPSLHVYA
QLSKPEGVREGSMPCTAWKCTTQLLNSPTNSENVPAEAVERVSLLAIAWDRKVQVAKLVK
TELKVYGKWSLESSAIGVAWLDDQMLVVLTVTGQLCLFAKDGTVIHQTSFSRDGFGGDDL
ISYHTHFVNVFGNPEKAYNNCIAVRGASVYVLGPTHLIVSRLLPWKERIQVLRRAGDWMG
SLNMAMTIYDGQAHGVVDLPRTLDAVQEAIMPYLVELLLSYVEEVFSYISVAFCNQIGKM
DQVDDLNRQSSSVHTEIKEQYTRVGGVAVEFCVHIKRTDILFDEIFLKFVAVQQRDTFLE
LLEPYILKDMLGSLPPEIMQALVEHYSLKGWLQRVEQCVLHMDISSLDFNQVVRLCREHG
LYSALVYLFNKGLNDFRSPLEELLVVLRNSQKEGAMALGYRMLVYLKYCFSGLAFPPGQG
KIPPLRLPSLRTELLHFLLEGSDAPNSRALSSEFPGGEHLNLYYLLELDTEATLDVLRCA
FSKNEISKPDFSSQNSADADIELQYGNNSMAQSQDSLVQNTIDTLIHIISKDVPQKDGSA
SSVDPGSVVAWPSKKDIDHLFEFIAFYVACGKANVSKAVLSQILEYLTSENNFPSSVSGD
NMISKRREKQVLGLLEVVPETDWDSSSVLQLCEKAQFYQVCGLIHTSRHQHLAALDCYMK
DAAEPIHAFAFINKILLRLTDKERAGFRSAVISRIPELFDLNREGAFFLVMDHFTSEEGS
HILSKLRSHPKSLFLYLKTVIEVHLSGTLDFSSLRNNNLMGVKEQTKAVEAFLERISNFP
QLLRDSPINVTDDMIELYLELLCQFERKSVLKFLETFDSYRVEHCLRLCQKYAIVDASSF
LLERVGDVGSALLLTLSSLNEKFMKLETAVGSLPSTGASRGSASTEYLNKALKLQEVNDI
DSILHACIGLCQRNTHRLNPDESEALWFRLLDSFCEPLMDSFSAGTVSKGQDLNRMVTNS
LDSQEDDLNFIIKWRIPKPHKGADVLRKLFSRFIKEIVEGMMGYVRLPTIMSKLLSDNGS
QEFGDFKFTILGMLSTYGFERRILDTAKSLIEDDTFYTMSILKKGASHGYAPRNQKCCIC
DCLLDKNSSSYIRIFTCGHATHLKCEVSENETPSRSSSSGCPVCMPKTKSQRAKNKSALA
EESLVNKFSSRTKNTHGTTVHLHESNASENSYGIQQISRFEMLTNLQKHSGLVEIENMPQ
LRLAPPAVYHEKVKHGPVLSPGESSSNLARTGKQSKIKQLREVKVKGSSIRFPLKTNLFG
NGKDKISRR
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaagctcacacagccggaaccccaactcgccatggagctcgacctcgactcc
ttcctcacctcccacctctcctccgattccgactccgacgccgacctcgcctccgtccct
cgccgcacgatcgacgaaatcctcaacgacaccgattcctccacgtcaccctccccctcc
tcctccccgcgcagcagctccgccttatctcagttcctcgcctccgatcccaaaccgcca
caaaccgacgccgtttccgtcgcctcggcgcggtcgagtcagttggaggagaagtcggtc
cggccgggtttgaatttgtatagtcgagctaggtccggtgacttcccggacgatcaggtc
gggagagtttcgcggccgtcgccgtggctgttgggaggtgtgaggacgaatgcgaagccc
ggggcggcgctcgcggcggctgcggcggcttccaggtcgatgccgacgccgcacgccgcg
gcgatcaagtcgaggaggagcgccgggagcgggagcttccagaaggctgtggaggctgtc
gtggctgaggaattgggtgtgagatcggaggataacaatgcggttggttccgaaacgacg
gcgatgagttcgaatggagcagaggagggttttggtggtgaattggggaggaaagatgag
gttttggagagggagagtgtggtagatgaagttagtgctggcaatgctggtgcagaagag
gtcagtagtgttagttttgataagaattcgatgaatttagatggaaatgatggtaaagat
aatgaattcgatgagaatgttgaggttgcggtggaatctaatccggaattggatgagaac
agtccttctccgagacgtagtgatgttgaggatgagcctactggtgaggatcagcagcat
tttgttggtaatgatgataatgatgaggttggtgataatgatgatggtattaaagatggt
gatgatcattttgatgacgaggatggtgcattgggaacttcaatcactcagcttgtggag
gagagaatggagcaattggagagcaggagggttagtaaaaaagcggaaaagaaattgaga
aagccgcttgaaattgctgaagagctggagaagaaacaagcttcaactgctttgcattgg
gaagagggtgctgctgctcaacccatgaggcttgagggtgttcggagagggtccaccaca
ttgggatactttgatgttgatgctaaaaacaccattactcggaccctttctgctccggct
ttgaggcgtgatcatggttcgccgcaagtactgggagttcacagtaattacattgcaata
ggaatgtcgagaggggttgtccttgttgtccccagtaaatactctcctcataatgctgat
aacatggatgcaaagctgctatttcttggattgcaaggagagcggtcttatgctgcggta
acttctatatccttcaatcagcaaggggatctactcttagctggatacgccgatggtcac
attacagtttgggatgttcagagggcatccgctgccaaagtaattacaggagaacataca
gctccagttgtacatacttttttcttggggcatgattctcaggtcacacgtaattttaag
gcagttactggtgatagtaagggtctggtactgttacattccttctctgtggtgcccctg
cttaatagattctcgatcaaaacacagtgccttctagatggacaaaaaacaggcacgacg
ctgtcagcttcaccactcatcattgatgaatcatgcggaggctcttcactatcctctcag
ggaaatgcgatgggttcaggcagcagtattggtggtatgatgggtggtgtggttggtgcg
gatgcaggatggaaactcttcaatgaaggatcctctttggttgaagaaggtgtggtcgta
tttgtcacccatcaaaatgctctggtggtaagactaactcccagtttgcatgtctatgca
caactttctaaaccagaaggggttcgtgagggttccatgccctgtactgcttggaaatgt
acaactcaattgctcaattcacctactaatagtgagaatgtgcctgctgaagcagttgag
agagtttcattacttgcaattgcttgggatcggaaagttcaagtagcaaagttggtcaaa
acagagctgaaagtatatggtaaatggtctcttgaaagttcagccataggagtggcttgg
ttggatgatcagatgctggtggttctcacggtgactggacaactttgtttgtttgcaaag
gatggaactgtaattcaccaaacaagtttttctcgagatggttttggaggggatgatctc
atttcgtatcatactcacttcgtcaatgtatttggaaaccctgaaaaagcttataacaat
tgcatagctgtaagaggagcttctgtatatgtacttggacctactcatcttattgtttcc
cggcttctcccatggaaggaacggattcaggttttacgaagagctggtgactggatgggt
tctttgaacatggcaatgacaatttatgatggccaagctcatggtgtcgttgaccttcct
aggactctggatgctgtgcaggaggccataatgccttacctggttgaattgcttttgtca
tatgtagaggaagttttttcttatatatcagtagcattctgcaaccaaattggaaaaatg
gatcaggttgatgacttgaacagacaaagtagttctgtgcacaccgaaataaaagagcaa
tacacccgtgttggtggggtcgcagttgaattctgtgtccatatcaagaggactgacata
ctctttgatgaaatcttcttgaaatttgtagctgttcaacagagagacacatttttggaa
ttattggagccttatatattgaaagacatgcttggttctcttccgcctgagattatgcaa
gctctggtggaacattacagcctcaaagggtggttacagcgtgttgaacaatgtgtcctt
cacatggatatttcttcattggatttcaatcaggttgttaggttatgccgggaacatggg
ttatatagtgccctggtgtatcttttcaacaaaggattgaatgatttcaggtcaccatta
gaggagctgttggttgtcttgcgaaatagtcaaaaagaaggtgctatggcccttggatac
aggatgctagtttatttgaagtactgcttctctggcctggctttcccaccaggacaagga
aaaattcctcctttacgcttgccatctctcagaacagaacttttgcactttttattggag
ggctctgatgcccctaattcaagagcactctcaagcgaattccctggaggagaacatctc
aacctttattatctcttagagctagatactgaagctactttagatgttctgagatgtgct
ttctcaaaaaatgaaatctccaaacccgacttctcttctcaaaattcagctgatgcagat
atagagcttcagtatgggaataactcaatggctcaaagtcaggattcattggtccagaat
acaattgatactcttattcacattattagtaaggacgttccccagaaggatggatctgct
agcagtgttgaccccggatcagtcgtagcatggccttcaaagaaagatattgatcatctg
tttgagtttattgcattttatgttgcatgtggaaaagctaatgtctcgaaggctgtactg
tctcagattttggagtatttgacatcagagaataacttcccctcatctgtttctggagat
aacatgatttcaaaaagaagagagaagcaggttcttggccttcttgaggtagtgccagag
actgattgggattcatcttctgtgttacagctatgtgagaaagcacagttttaccaggta
tgtggcctaattcataccagcagacatcaacatcttgctgctctggattgctatatgaaa
gatgcagctgaaccgattcatgcctttgcctttatcaacaaaatattgttgcggttgaca
gataaggaacgtgctggttttcgatcagcagttatttctcgaattccagagttatttgac
ttaaacagagagggtgcattcttcttggttatggatcattttaccagtgaagaaggttct
catatactatctaaacttcgctcccatcctaaaagccttttcctttacttaaaaacagtg
atagaggttcatttatctggcactctcgacttttcaagtttaagaaataataatctcatg
ggagtgaaggaacaaacaaaagcagttgaggctttcttggaaaggatctctaatttccca
cagcttttgcgtgatagtcctattaatgtgactgatgatatgattgagctttatctggag
ctgttatgtcagtttgaacgcaaatcagttctcaaatttctagagacttttgatagctat
cgtgtggagcactgtttacgcctctgccagaaatatgcaatagtagatgcctcatcgttc
ttgttggaaagggttggtgatgttgggagtgcacttttacttacactatcctccctcaat
gaaaaattcatgaaacttgaaaccgctgttggaagtctaccatcaactggggcttcacgt
ggttctgctagtacagagtacttgaacaaagctttaaaactacaggaggtgaatgacatt
gatagtatattgcatgcctgtattggattgtgccaacggaacacccatcgtttgaatcct
gatgaatcagaggcactttggtttagattgcttgactcgttttgtgagcctttaatggat
tcgtttagtgcgggtacagtctctaaaggacaagatcttaatagaatggtaaccaattca
ttggattcacaagaggatgatttgaatttcataatcaagtggagaatcccaaagccccat
aaaggtgctgatgtcttaagaaaattgttttctcggttcatcaaggagattgttgagggc
atgatgggatatgttcgccttccaactatcatgtcaaagctgctttctgacaatggtagc
caggaattcggtgattttaaattcacaatattggggatgctgagtacgtatggcttcgaa
agaagaattctggatactgccaagtccctgatagaagatgatacattctatactatgagc
atccttaagaaaggagcttcacatgggtatgccccccgcaaccaaaaatgttgcatatgc
gattgccttcttgacaagaactcttccagttacattcgcatttttacttgtggtcatgcg
acacatcttaaatgcgaagtttcagagaatgaaacaccaagtcgtagctcgtcctctgga
tgccctgtttgtatgcccaagacgaaatctcagagggctaaaaacaaatcagctcttgca
gaggagagtttagtgaacaaattttcatcaagaaccaaaaatactcatggaacaacagtt
cacctacatgaaagcaatgcatctgagaatagctatgggattcagcaaatttcacgattt
gagatgttgaccaatttgcagaaacatagtggattagtcgagattgaaaatatgcctcaa
ttgaggcttgccccaccagccgtgtaccatgaaaaggttaagcacggacctgttctgtca
ccaggagagagcagtagtaatcttgcgagaacagggaaacaaagtaaaatcaagcaactc
agggaggtaaaagtaaaaggatcatctattcggtttcctttgaaaacaaatttatttggc
aatggcaaggacaagatcagcaggcgatga
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integrated database retrieval system
