Fragaria vesca (woodland strawberry): 101307995
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Entry
101307995 CDS
T02666
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 16
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
fve01002
]
101307995
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101307995
Enzymes [BR:
fve01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
101307995
Peptidases and inhibitors [BR:
fve01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
101307995
Ubiquitin system [BR:
fve04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
101307995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf-MYND
Motif
Other DBs
NCBI-GeneID:
101307995
NCBI-ProteinID:
XP_004301361
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All DBs
Position
LG5:12704065..12711724
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AA seq
1140 aa
AA seq
DB search
MHVSVDLGFRSLVLVACVLVPVIGFFVARHKWRQAAARGEEIKRLLALAAAEAARAEFEV
TAGYDVVLAPPEKRDSYCAVCYCPTTTRCARCKAVRYCSGKCQIVHWRQGHRENCQPAPT
VDPNVDGESDEGQKVTKKNLESNADKFEARQSTEKISEEPAVPNPGCPLEVQCVKDDDSE
DEYLANRKEKNSPSGSSATSFSGFSTSTNGSGSSDDVSVSESVSSFEPDRADAHQSVNDS
IDMLQNSFNLEQIDQSRPLSPKFACLVDSVDGFAKLSKSNQVKPSCNNGENEQISNSSSD
VNYNGRSKGPCRPATKSCTTSSDFWGRTLDSFESESDDHVSSSCIASKSKISPSGSSSHI
SFESSTAVPLHTGDSESIGSILDDALPDTSGHKSVYGAELLEKISGDVSKLRNSTSLNFK
GLRNDDSGPPNNSPTFNSREIKFMASSSSNGHKSLSSEIVSSKEALHSSRVVPTSSERSS
HISKNSSRTLKSREADCQSSSVSDACLVSGGRGSSGVSVKSGNGHSVEASDTVSSQVTRS
LNDKTGLKTSVFKVFDQFRGPKLSKHYPLGVGGEIAGKHAEKELFPYEVFVKLYNWNKVE
LHPSGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCAKKDWCFMCEFEILILKAK
EGKSPLSPIGILSQLRNIGSQLGNGREEDAHEFLRHAIDTMQSVCLMESGVNAPRSLKEE
TTLIGLTFGGYLRSKIKCSRCQGKSERQERMMDLTVEIEGDIATLEEALRRFTGTEVLDG
ENKYQCSRCKSYEKAKKKLTILEAPNVLTIALKRFQSGKFGKINKPIRFPEILNLAPYMS
GTSDKSPIYKLYGVVVHLDVMNAAFSGHYVCYVKNLQNKWFKVDDSTVTAVELENVLAKG
AYMLLYSRCSARAPRLIRNRIISSDPKHRAIPSCISGKSTNLKSNSFSTHPSGSQSPTCP
PENSTSYPLLQRISEEDSSSDNSSLISSRSDEGSSSTDSTWYSTSTDDCSDYSCGDPGRG
WNSPGRSFSDCDSSSSSSSSPMSLKHSPLSDSNRYASSASESVGFWDSRPFEDSRRFADS
DGKVSGPFLNSDITKQCRKLASSSSSSSSSRKLTDSERLGRDSVSNVKLRTSNCERTAGV
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtatcggtggatctagggtttcggagcctggtgctggtggcctgcgtcctggtg
ccggtgatcggattcttcgtcgctcgccacaaatggcgccaagccgcggccagaggtgag
gagatcaagcggctgttggctttggccgccgcggaagctgctagggccgagtttgaggtc
acggctggctacgacgtcgttttggctcctcctgagaagagggattcttattgcgccgtc
tgctactgccccaccaccacccgctgcgcccgctgcaaggcggtccggtactgttctggg
aaatgtcaaattgttcactggcgacaaggtcacagggaaaattgccagccagcacccaca
gttgatccaaatgttgatggggaaagtgatgaaggccagaaggtgaccaagaaaaatctt
gaatctaatgctgacaagtttgaagctaggcagtcaactgaaaaaatctccgaggaacct
gcagttcctaatcctggttgccctctagaggttcagtgtgtaaaggatgatgatagtgaa
gatgaatatcttgccaataggaaagagaaaaattctccttctgggtcatcagctacctct
ttttctggattttctacttctacaaatggtagtggatcttcggatgatgtttctgtcagt
gaaagtgttagttctttcgaacctgacagagcagatgcacaccaatctgttaatgattcc
attgacatgctgcagaattcatttaatctggagcaaattgatcaatctaggccattatcc
ccaaagtttgcttgcttggttgattctgtggatggatttgcaaaactaagtaagtcaaat
caggttaaacctagttgcaataatggagagaacgagcagatatcaaactcttcttcagat
gtgaattataatggcagaagtaagggtccatgccgtccagctaccaagtcatgtacaaca
tcgtctgatttctggggaagaactcttgattctttcgagtctgagagtgatgatcatgtg
tccagttcctgtattgctagtaaaagcaagatatctccttctggatcctcctctcacatt
tcgtttgaatcgtccactgctgtccccctacatacaggagactctgagtcaattggcagt
atattagatgatgctcttccagacacttcagggcataaatctgtatatggggctgagtta
ttggaaaagattagtggagatgtttcaaagctcaggaactccacatccctaaacttcaaa
gggttgagaaatgatgatagtggacctcccaataattcacctacattcaactctagagaa
attaaatttatggcatcatcctcgtctaatggtcacaaatctcttagcagtgaaattgtt
tcaagtaaagaggctttgcattctagtagagtggtgcctacaagttcagaaaggtcgagt
catatttctaagaacagcagtagaacgttgaagtctagagaagctgattgtcagtcatct
agtgtttcagatgcttgtcttgtatctggtggtcgaggctcttccggtgtaagtgtaaaa
tctggaaacggtcattctgttgaggctagtgatactgtttcatctcaggttacaagatcc
ttaaatgataagactggcttgaagacttctgtatttaaagtttttgatcagtttagagga
cctaaactctcaaagcactatcctttgggagttgggggtgaaattgcaggaaaacatgct
gagaaggaactatttccgtatgaagtatttgtcaagctttacaattggaacaaggtggaa
ttgcacccttctggccttataaactgtggtaacagctgctatgccaatgcagtcctccaa
tgcttggcatttactccgcctctgactgcttatttgcttcagggactccattctaaatct
tgtgcaaagaaggattggtgtttcatgtgtgagtttgaaattctaattttgaaggcaaag
gaagggaagtctccactgtctcctattggaatactttcccagctaagaaatattggaagt
caacttggtaatgggagagaggaagatgcccatgagtttttaagacatgctattgacaca
atgcaatccgtttgccttatggaatctggggttaatgctccgcgttctttgaaggaggaa
acaactttaataggccttacctttggaggttaccttcgatcaaagataaaatgctcaagg
tgccaaggcaagtcggagcggcaagaaagaatgatggatcttactgtggaaattgagggc
gacatagcaaccctggaagaggctcttcggcgatttactggcactgaggtcttagatggt
gaaaataagtaccaatgtagcagatgcaaatcttatgagaaggctaaaaagaagttgaca
atactggaagctcccaatgtccttactattgcattgaagcgatttcagtccgggaaattt
gggaagatcaataagcccatacggtttcctgaaattctgaacttggcgccttacatgagt
ggcacaagtgataaatcacctatatacaagctgtatggggttgttgttcacttggatgtc
atgaatgccgcattttctggtcattatgtgtgctatgttaagaatctgcagaacaagtgg
ttcaaggttgatgacagcacggtgactgctgtagagcttgaaaatgtcttggcgaaaggg
gcgtacatgcttctttattcaaggtgctcggcaagagccccgagattaataaggaacaga
ataatatcttcagatccaaaacatagagccattccttcatgtatcagtggaaagagtacc
aatttgaaatcaaattccttttccactcatccaagtggttctcaatcccctacttgtcct
ccagagaattctaccagttatccactattgcaaaggatttcagaagaggactcatcaagt
gacaattcttctcttatcagcagccgttctgacgaaggttcttctagtactgatagcaca
tggtattctactagcaccgatgattgctccgattattcatgcggtgatccaggacgtggg
tggaatagccctgggagaagtttttcggattgtgacagttcttcctcatcctcttcctca
cccatgagtttgaagcactcgccactttctgattcaaaccggtacgcttcaagtgccagc
gagtccgtaggattttgggacagccgacctttcgaggatagccgcaggtttgcagattca
gatggcaaagtgagtggtccttttttgaattctgacatcactaaacagtgtagaaagtta
gccagtagtagtagtagtagtagtagcagtagaaagttaaccgactctgagagattagga
cgtgattcggtaagcaatgtaaaattaagaacatcgaattgcgaaagaacagcaggcgtt
tga
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