Fragaria vesca (woodland strawberry): 101308109
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Entry
101308109 CDS
T02666
Name
(RefSeq) ABC transporter A family member 1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101308109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
fve02000
]
101308109
Transporters [BR:
fve02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101308109
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
SMC_N
AAA_22
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
101308109
NCBI-ProteinID:
XP_004304342
LinkDB
All DBs
Position
LG6:complement(33131477..33163030)
Genome browser
AA seq
1888 aa
AA seq
DB search
MGTGARQLKAMLRKNWLLKIRHPFVTCAEILLPTVVMLMLIAVRTHVDTQIHPSQPYIRK
GMLVEVGKGISPNFEQVLXLLLKKEEILAFTPDTKETRSMINVMSIKFPLLKHVSRVYKD
EEELETYIRSDLYGTCNQIMNCSNPKIKGAVVFHDQGPQRFDYSIRLNHTWAFSGFPDVK
SIMDTNGPYFNDLELGVNTVPTMQYSFSGFLTLQQALDSFIIFVAQQSDTKNIELPTPLS
SSTLSSLKVPWTQYGPSTIRVAPFPTREYTDDEFQSIIKSVMGVLYLLGFLYPISRLISY
SVFEKEQKIREGLYMMGLKDGVFHLSWFIAYALQFAVSSLIITVCTMDNLFKYSDKSVVF
VYFFFFGLSAIMLSFLISTFFERAKTAVAVGTLAFLGAFFPYYSVNDEAVPMILKVIASL
LSPTAFALGSINFADYERAHVGLRWSNIWRASSGVNFSVCLLMMLLDALLYCVIGLYLDK
VLPRENGVRYPWNFIFQKCFWKTPNVNNYHNSSPEVHIRDKVSQKAMFSGKENAKAAVEA
ITFDMKQQELDHRCIQIRNLRKVYANKKGKCCAVNSLQLTMYENQILALLGHNGAGKSTT
ISMLVGLLRPTSGDAMVFGKNITTDMEEIRKELGVCPQHDILFPELTVKEHLEIFAILKG
VREDFVNSVVIDMVDQVGLADKINTTVMALSGGMKRKLSLGIALIGNSKVIILDEPTSGM
DPYSMRLTWQLIKKIRKGRIVLLTTHSMDEAEALGDRIAIMANGSLKCCGSSLFLKHQYG
VGYTLTLVKSAPTASMAADIVYRHIPSATCVSEVGTEISFKLPLASSTSFESMFREIESC
MRSSILNLGTSSDEKDYIGIESYGISVTTLEEVFLRVAGCDYDEAASFDLKNGLLCPESQ
ISQTSHDPTHKQIFHSKKSFAYYKGILGVLFEMVGRACGLIFSTVLSFLNFLGVQCCGCC
IISRSTFWRHSKALFIKRAISARRDRKTIVFQLVIPAVFLFFGLLFLKLKPHPDQESVTF
TTSHFNPLLRGGGGGGPIPYDLSWPIAHEVAEHITGGWIQTFKPSGYKFPNSEKALNDAI
EAAGETLGPALLSMSEFLMSSFNESYQSRYGAVVMDNQSDDGSLGYTVLHNSSCQHAAPT
FINLVNAAILRLASRDKNMTIQTRNHPLPMTQSQHLQRHDLDAFSAAVIVSIAFSFIPAS
FAVPIVKEREVKAKHQQLISGVSILSYWTSTYIWDFISFLFPSSFAIILFYIFGLDQFIG
RGCLLSTVIMFLAYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLI
KTTASANSFLKNFFRLSPGFCFADGLASLALLRQDMKNKSSNKAFDWNVTGGSICYLGIE
SLCYFLLALGLEIFPFNKLTLATLKEWWKSIKIIHPGTSSYREPLLTSSAESITLDLDED
TDVKTERTRVLSGSIDNAIIYLCNLRKVYPGGQQHATKVAVHSLTFSVQEGECFGFLGTN
GAGKTTTLSMLTGEESPTDGTACIFGKDICSNPKAARQHIGFCPQFDALLEYLTVQEHLE
LYATIKGVPDYKIDEVVMEKLMEFDLLKHASKPSFSLSGGNKRKLSVAIAMIGDPPIVIL
DEPSTGMDPIAKRFMWEVISRLSTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG
SPQHLKNRFGNHLELEVKPIEVSSVDLDKLCRVIQERLSYVPSHPRSLLDGLEVCIGATD
SIVAENASVAEISLSREMIIMIGRWLGNEERIKPLISATPLSDGVLGEQLFEQLDRDGGI
PLLIFSEWWLSSEKFSAIDSFVLSSFPGAMFQGMNGLSVKYQLPCGPDLSLADVFGHLER
KRNRLGIAEYSISQSTLETIFNHFAANS
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggggaccggagcaagacagctcaaggcgatgcttcgcaagaattggcttctcaaaata
cgtcaccctttcgtcacctgcgctgagatattactccctacggtagtcatgttgatgctc
atagctgtaaggacacatgttgatacacagattcacccttcacagccgtatatccggaaa
gggatgttggtggaagtgggaaaaggaatatcccctaattttgagcaagttttgtaatta
ctattgaagaaggaagagattttggcttttacaccagatacaaaggagacaaggtcaatg
attaacgtgatgtcgattaaatttcctctcttgaagcatgtttctagagtttacaaagat
gaggaggagctggaaacctatatacgctcagatctctatggtacctgcaatcaaatcatg
aattgctcgaacccaaaaatcaaaggagcagtagtatttcatgatcaaggtcctcaacgt
tttgattatagcattcgtcttaatcacacatgggctttctcgggatttcctgatgttaaa
tcgatcatggacacaaatggcccttacttcaatgacttggaactgggcgtgaatactgta
ccgacaatgcaatacagcttcagtggatttttaactctccagcaagcactggattctttc
ataatttttgtggcccagcaatctgataccaaaaatatagaacttcctactccgctgtcc
tctagcacactttcgtctctcaaagttccatggacgcaatatggtccgtcaaccattcgt
gtagccccgtttccaacacgtgaatacactgatgatgagttccagtccatcataaaaagt
gtcatgggtgtattgtatcttttgggatttctctatccaatttcacgcttgatcagctat
tctgtgtttgagaaggaacaaaagataagagaaggtctctatatgatggggctgaaagat
ggggtattccatctatcatggtttattgcatatgctctgcagtttgcggtttcttctctt
attattacagtttgcacgatggataaccttttcaagtatagtgacaagtctgtggtgttt
gtttacttcttctttttcggactaagcgcgattatgctgtcatttttaatctctacgttc
tttgaacgagcgaagacagctgttgcagttgggacccttgctttcttgggtgcttttttc
ccttactactctgtcaatgacgaggctgttcctatgattctaaaggtcattgcctcactg
ctttcgcctacagcctttgcactgggttcaatcaactttgcggattatgagcgtgctcat
gttggtcttcgttggagcaatatatggcgggcatcgtcaggagttaatttttcagtctgt
ctcctgatgatgttgctcgatgcgttactctactgtgtaattggtctttacctagataag
gtacttcctagagagaatggagttaggtatccctggaacttcatttttcagaagtgtttt
tggaagactccaaatgttaacaactaccacaattccagtccagaagttcacattcgcgac
aaggtatcccagaaggcaatgttttctggtaaagaaaatgctaaggctgctgtggaagca
ataacctttgatatgaaacaacaagagcttgaccatagatgcatccaaataaggaatctg
cgtaaagtttatgctaataaaaaggggaaatgttgtgctgtcaactcattacagctcacc
atgtatgaaaatcagattcttgctcttctaggacataatggagctggtaaaagcacaacg
atatcaatgcttgttggccttcttcgccctacttcaggggatgctatggtatttggaaaa
aatattacaacagacatggaggagatacggaaagagttgggtgtatgccctcagcatgat
atcctttttccagaattgacagtgaaggagcacttggaaatattcgccatcttgaaaggt
gtgcgagaagattttgtgaacagtgtcgtgattgatatggttgaccaagtagggttggcc
gataaaatcaacactactgttatggctctttctggaggcatgaagaggaagttgtctctt
ggaattgcactaataggaaatagtaaggttataattcttgatgaacctactagtggaatg
gatccatactctatgcgcttgacttggcaattaataaaaaagattagaaagggaaggata
gtattactgacaacgcactcaatggatgaagctgaggcacttggagatcgcatagccatc
atggctaatggttcgttgaaatgctgcggaagttcgcttttcttgaagcatcagtatggg
gttggttatactctaactttagtgaagtctgcacccactgcctctatggctgctgatatt
gtttaccgccatatcccatcagcaacatgtgtgagtgaggttggaactgagatttccttt
aagcttcctttggcatcttcaacatccttcgaaagtatgtttagagaaattgagagttgc
atgagatcatccatattaaacttaggaacaagttctgatgagaaggactatattggcatt
gaaagttatggcatatctgtcacaactttggaggaggtgttcctgagggttgcaggctgt
gattatgacgaagctgcttcttttgacctgaagaatggtttactgtgccctgagtctcag
atctctcagacttctcatgatcctacccacaaacagatttttcactcaaagaaatctttt
gcttattataaagggattcttggggtcttatttgaaatggtgggaagagcctgtggtttg
attttttctacagtgttaagtttcttaaacttcttaggcgtgcaatgctgtggctgttgt
ataatttcaaggtcgacattttggaggcattctaaagcattattcataaagagggcaatt
tctgcccgtagagaccgtaaaacaatcgtgttccagcttgtaattcctgcagttttctta
tttttcggtcttttgtttctcaagctcaagccacatcctgatcaggagtctgttaccttc
acaacttcacattttaatccactattacgtggtggaggtggtggtggtccaattccttat
gatctgtcctggcctattgcacatgaggttgcagaacacataacaggaggttggatacaa
accttcaaaccaagtgggtataaatttcccaactcagagaaggcattgaatgatgcaatt
gaggcagcaggggaaactctgggacctgctttactttcaatgagtgaatttttgatgtcc
agttttaatgaatcttaccagtcaaggtatggggcagttgtgatggacaatcagagtgat
gatgggagtttagggtacactgtgctacacaacagttcctgtcagcatgctgccccaacc
tttatcaatttggtgaatgctgcaattcttaggcttgcttctcgtgataagaatatgaca
attcaaacacgcaatcatcctctgccaatgacacaaagtcaacatcttcaacggcatgat
ttggatgctttctctgctgcagttattgttagtatcgccttctcctttattcctgcatcg
tttgctgttcctatagtgaaggaacgtgaagtaaaagctaagcaccaacaacttattagt
ggggtttccatactgtcatattggacttctacatacatatgggacttcattagcttcctc
tttccttcatcgtttgccataattcttttttacatatttggtttggaccagtttattgga
aggggatgtttactgtcgacagtcatcatgtttttagcatacggattagcaatcgcatca
tcaacatactgccttacatttttcttttctgatcacactatggctcagaatgtggttctc
ttagtccactttttcactggactcattctcatggttatctcattcattatggggcttata
aagacgacagcaagtgcaaattcttttcttaagaactttttcagattatctccaggattt
tgctttgctgatggactggcttcactggctcttctacgtcaagatatgaaaaataaatca
agcaataaggcctttgattggaatgttactggtggctcaatctgctatctcggtattgag
agcctttgctacttccttttggcacttggtcttgaaatctttcctttcaataagttgaca
ctagccacactcaaggagtggtggaagagtataaaaattatccaccctggcacttcaagt
tatcgagagccccttctgacttcttccgcagaatccatcactctggaccttgatgaggac
acagatgtgaagacagaaagaactagggtactttcaggttccattgacaatgccatcatc
tacttgtgtaatcttcgtaaggtatatccaggaggacagcagcatgctacaaaggtagcg
gtacattcattgactttttcagttcaagaaggagaatgttttgggtttttaggaacaaat
ggagctgggaagaccacaactctttctatgttgactggtgaggaatctccaacggatggg
actgcttgtatatttggcaaggatatttgctccaatcccaaagctgcacgtcaacatatt
gggttttgcccacagtttgatgctctgttagaatatttaactgttcaagagcatcttgag
ctttatgccacgataaaaggagtaccggattataaaatagatgaggttgtaatggaaaag
ttgatggagtttgacttgttaaagcatgccagcaaaccatcattttccctcagcggggga
aacaagcgtaaattatctgttgcaattgccatgattggagatcctcctatagttattctt
gatgagccatcaacaggtatggatccaattgccaaaagattcatgtgggaagtgatatct
cgtttgtcaaccagacgaggaaagacggcagtgatactcactacccatagtatgaatgaa
gctcaagctctgtgcacgcgcatcggaatcatggttggaggccagttaaggtgcattgga
agtccccagcatttgaaaaatcgatttgggaatcatcttgagctagaggtgaaacctatt
gaagttagctctgtggacttggacaagctttgccgtgttatccaagaaagactctcatat
gttccttctcatccaagaagcttacttgatggccttgaagtctgcattggtgccactgac
tccatcgtggcggaaaatgcatcggtggcagagattagtttatcacgagaaatgattatt
atgattggacggtggcttgggaatgaagaaagaataaagccgcttatatctgccacacca
ctttcagacggggtgcttggtgaacagttatttgagcagttagatcgagatggtggaata
ccattgctaatattttcagaatggtggctgtccagtgaaaagttttcagcaattgattca
tttgtcctatcatcatttcctggtgcaatgttccagggaatgaatggcttgagtgttaaa
tatcagttgccttgtggtccggacctctctcttgctgatgtatttggtcaccttgaacgg
aaaagaaaccgccttggaattgcagaatatagtatcagccagtccactctggagaccata
ttcaatcattttgcagccaactcttga
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