Fragaria vesca (woodland strawberry): 101308246
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Entry
101308246 CDS
T02666
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
101308246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101308246
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
101308246
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
101308246
NCBI-ProteinID:
XP_004309692
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Position
Un
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AA seq
584 aa
AA seq
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MLRMASSFPEEVLEHVFSFLQSDGDRNSISLVCKSWYEIERWCRRRIFVGNCYAVSPRIM
IRRFPDVRSITLKGKPHFADFNLVPEGWGGYVYPWIAAMASAYPWLEEIRLKRMVVTDES
LELIAKSFKNFKLLVLSSCEGFSTDGLASIAANCRNLRELDLHDSDVEDLSGHWLSHFPD
TYTSLVSLNIACLGSEVSFSALERLVGRCPNLRSLRLNRAVPLDKLSNLLNRAPQLDELG
TGASSAELRPDVLSNLSGALSACKELKSLSWFWDVVPTYLSAVYSICPGLTSLNLSYAII
QSPDLIKLVSQCPNLQRLWVLDYIEDVGLDALAASCKDLRELRVFPSDPYVLEANVSLTE
QGLISVSEGCPKLQSVLYFCRQMSNDALITIARNQPNFTCFRLCIIEPRTPDYLTREPLD
VGFGAIVERCKDLRRLSVSGLLTDRAFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCD
NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDER
GHPELRPESCPVEKLYIYRSVAGPRFDMPGFIWTMDEHSAVRLT
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaatggcgagctcgttcccggaggaggtgctggaacacgtgttctcgttcctg
cagtcggacggcgaccggaactcgatctcgctggtgtgcaagtcgtggtacgagatcgag
cggtggtgcaggaggaggatattcgtcgggaactgctacgctgtcagccctaggattatg
atcagacggttcccagacgttagatccatcacgctcaaagggaagcctcacttcgccgac
ttcaatctggtcccggagggctggggtggctatgtgtacccctggatcgccgccatggcc
agtgcctatccgtggctggaagagatcaggctcaagaggatggtcgtcaccgacgagagc
ttggagctgattgccaagtctttcaagaatttcaagctgcttgtgctttcgtcctgtgag
gggttcagcactgatggcctggcctccattgccgctaattgcaggaatttgcgggagttg
gacttgcatgacagtgatgtggaggacctaagtgggcattggctgagccattttcctgat
acctacacgtcacttgtctctcttaacattgcatgcttgggttctgaggttagtttctct
gccctggagcgcctggtgggtaggtgtcccaacctgaggagtctcaggctcaaccgtgca
gtgccccttgacaagctatccaatctacttaaccgtgcgcctcagctggatgagttgggg
acaggggcctcctcagctgagttgcggcctgatgtcttgtcaaacttatcaggtgccctc
tcggcctgcaaggaactcaagagcctgtcttggttttgggatgtggttccaacttatctt
tcagctgtgtattctatatgccctggcttaacttcgctgaatttgagctacgccattatc
caaagtcctgaccttattaagcttgttagccaatgcccaaatttgcagcgcctttgggta
ttggattacattgaagatgtcggccttgatgccttggcggcgtcttgcaaggatctgcga
gagttgagggtgtttccatctgatccatatgtgttggaagcaaatgtgtccttgacagaa
caaggcctcatttctgtttccgagggttgtccaaagctacagtcagttctgtacttctgc
cgccaaatgtctaatgacgccttgatcaccattgccaggaatcaacccaactttacttgt
tttcgcctttgtataatcgagccccgaactcctgattatcttactcgtgagccacttgat
gtgggtttcggggccattgttgagcgttgcaaagatctccggcgcctgtctgtttctggt
ctgttaactgatcgtgcatttgagtacattggaacttatggcaaaaagttggagatgctt
tcagtagcctttgctggagagagtgacttgggacttcatcatgtgctgtcgggttgtgat
aatcttcggaaacttgagattagggactgtccttttggtgataaggcgcttttggccaat
gctgcaaagctggagacaatgcgatccctttggatgtcttcttgctcagtgagttatgga
gcatgtaagctgctaggtcagaagttgccccggcttaatgttgaagttattgacgagagg
ggacacccagaattgaggccagagagctgtcctgttgagaagctctatatatacaggtct
gttgctggtccaaggtttgacatgcctggctttatttggaccatggatgaacactctgca
gtgaggctcacttga
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