Fragaria vesca (woodland strawberry): 101308273
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Entry
101308273 CDS
T02666
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101308273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101308273
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101308273
Spliceosome [BR:
fve03041
]
Complex C
Other components
Step II factors
101308273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
Cas3-like_C_2
ABC_tran
AAA_16
SLFN-g3_helicase
PhoH
T2SSE
Flavi_DEAD
UvrD-helicase
TsaE
Motif
Other DBs
NCBI-GeneID:
101308273
NCBI-ProteinID:
XP_004296169
LinkDB
All DBs
Position
LG3:23622301..23625573
Genome browser
AA seq
1090 aa
AA seq
DB search
MDVDVKKLEKLSLISKVCSELETNLGPQHGDKILAEFITDLGQNSKSVEEFNAKLKENGA
AEIPDYLVRNLLTIIHAVLAPEKNPRSSKREDDKPKDRSRESRGSKGEEDKPRDRRRESR
GNEDQAYNSGEPELYGVYKGMVTRVMDTGCFVELSSLRGKEGLVHVSQMEKRRVSNAKDV
VKRGHQVYVKVVSISGQKLSLSMKDVDQKTGKDLLPITRSSGYDTRNSNPLMSRDGTASR
TSLSGIRIKEDSLVQSCRPRKRLSSPERWEIKQLIASGVLNAKDYAEIYQDEEVDSIMMV
YKDEGPEEELEIELNEEAPAFLQGHDMYSVDMSPVKIFKNPEGSLSRAAALQSALVKERR
EMRDQQQRAVLDSIPKDLNRPWEDPMPENGERHLAQEIRGVGLSAHDVPEWKKEAYGKAI
SFGNRSSLSIQEQRKSLPIYKLRKEVIDAVNENQVLVVIGETGSGKTTQLTQYLAEAGYT
TKGRIGCTQPRRVAAMSVAKRVAEEVGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLR
EILFDKDLMQYSVIMLDEAHERTIHTDVLFGLLKQLVNRRPDLRLIVTSATLDAEKFSGY
FNNSKIFTFEGRTHPVDVMYVKEPESDYLDAAIITVLQIHLQEPEGDILLFLTGQEEIDF
ACQVLYERMKALPKNIPELIILPVYSALPSEMQSRIFDLAPPGKRKVVVATNIAEASLTI
DGIIYVIDPGFAKQNVYNPKLGLDSLVITPISQASAKQRAGRAGRTAEGKCYRLYTVSAF
KNEMRPTTVPEIQRTNLASTVLAMKAMGINDLLSFDFMDPPTPQSLISAMEKLYSLGALD
EEGFITRLGMKMSEFPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNVFYRPREKQDRA
DQKRAKFFQPEGDHLTLLAVYQAWKGKNYSTPWCFENFLQSRSLRRAQDVRKQLMSIMDK
HRLDVVSAGNNYTKITKAITAGFFFHVARKDPQEGYKTFVENQPVYIHPSSALFQKQPGW
VIYNELVMTTKEYMREVTAIDPKWLVELAPRFFKAADPNKMTKRKRQQRIEPLYDRYNEP
NSWRLSRRRG
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatgtcaagaagctagagaaactttccttgatttcgaaagtctgttcggaa
cttgaaaccaatctagggccgcagcatggagacaaaattctagctgagttcataacagat
ctgggacagaacagcaaaagtgtggaggaattcaatgccaaattgaaggaaaatggcgct
gccgaaatccctgattacttagtccgtaatcttctcactatcattcatgcagttcttgct
ccggagaagaacccgagatcttccaaaagagaagacgataagcctaaagatagaagcaga
gagagcagaggttctaagggagaagaagacaagcctagagatagaagaagagaaagcaga
ggtaatgaggatcaagcgtacaattccggtgagccagagttgtatggtgtttataagggc
atggttacaagagtgatggatacaggctgctttgttgagttgagttctctcagagggaag
gagggtctggttcatgtttcgcagatggagaagaggcgagttagtaatgctaaagatgtg
gtgaagaggggtcatcaagtttatgtgaaggtggtttcgatttcaggtcagaagttgagt
ctttcaatgaaagatgttgatcaaaagacagggaaggatttgcttcctattacgaggagt
tcaggctatgatactcgtaactccaacccgttaatgtcaagggatggtactgcgagcagg
actagtctttctgggattaggattaaggaggatagtcttgtccagtcttgtaggccaagg
aagagactaagctccccggagaggtgggaaatcaaacagttgattgcttcaggtgttttg
aatgctaaagattatgcagagatttatcaagacgaggaagtggatagtataatgatggtc
tataaagatgagggacctgaggaagagcttgaaattgagctcaatgaggaagcgccggcc
tttttgcaagggcacgacatgtattctgtggatatgtcgccggtgaagatctttaagaat
ccagaaggatcactgagccgtgctgctgcacttcaatctgcgctggtcaaggagcgtaga
gagatgcgtgatcagcagcaaagagctgtgctggattctataccgaaggatttgaatcgt
ccgtgggaagatccaatgccagagaatggtgagaggcatcttgcacaggaaattagaggt
gttggtttgtcagctcatgatgtacctgagtggaagaaagaagcttatgggaaggctatt
agtttcgggaacaggtcaagcctttcgattcaggaacaaaggaagagcttgcctatctac
aagctgaggaaagaagtgattgatgcagtgaatgagaatcaagtacttgttgtcattggt
gagactggttctggcaagacaacacagctaacccagtatcttgcagaagcaggttacacg
acgaagggtagaattggatgtacacagcctcgtagggtggcggcaatgtcagtagcgaaa
agggttgctgaagaggttggctgtcggttgggggaggaagtcggttatgccattcgtttt
gaggattgcactggaccagatactgtcatcaagtacatgacagatggtatgcttcttagg
gagattttgttcgataaagaccttatgcaatattcagtgataatgcttgatgaagctcat
gagaggacaatccacacagatgttctatttggattactgaagcaactcgtgaaccgcaga
ccagaccttcgtttgattgttacctctgctactttggatgcagaaaagttttcaggttat
ttcaacaattccaagatctttactttcgaggggagaactcatccagttgatgtaatgtat
gtcaaggagccagaaagtgattaccttgacgcggctattatcactgttttgcagattcac
ttgcaagagccagaaggtgacatccttctcttcttgactggacaggaagagattgatttt
gcatgccaggttctttatgagaggatgaaagctcttcctaaaaatatacccgagttgatc
atcttaccggtttatagtgctcttccgagtgaaatgcagtctaggatatttgatctagct
ccaccagggaagaggaaagtagttgtggctactaatattgccgaggcatctctgactatt
gatggaataatttatgtcattgatcctggatttgcaaagcagaatgtttataacccaaag
ctggggctagattcactggtcataactccaatctcacaagcatcagccaagcaacgagct
gggcgtgccgggcgtacagccgaggggaaatgttaccgtctctacactgtgagtgccttc
aaaaatgagatgcgtcctactacagtccccgaaatccagaggacaaatcttgcgtctacg
gtgcttgcaatgaaagctatggggataaatgatctcctctcttttgattttatggatcct
cctacgccgcagtcactcatttcagccatggagaaactgtacagcttaggagcacttgat
gaagagggtttcataaccagactaggaatgaaaatgtctgagtttcctctagaaccaccc
ctctcgaagatgctactcgcaagtgtggacctcggatgcagtgatgagatcttgaccatc
atagcaatgattcagacaggcaatgtgttttacaggcctagggagaaacaagaccgcgct
gatcagaagagagcaaagtttttccagccagaaggagaccatcttactttacttgcagtc
taccaggcttggaaaggaaaaaactattcaacaccatggtgtttcgaaaactttcttcag
tctcgctccttgaggcgcgcgcaggatgtccgaaaacagctcatgagcatcatggacaag
cacaggctggatgttgtcagtgccggaaacaactacacaaagatcaccaaggcaatcacg
gccggctttttcttccatgtagctagaaaggatccacaggaaggttacaagacctttgta
gagaaccagccagtgtacatccacccaagcagtgctctctttcagaagcaaccaggttgg
gtcatctacaatgagctggttatgactacaaaggagtacatgcgagaggtgacagccatt
gatcccaaatggcttgtggagttggctcccaggttcttcaaagctgcagatcctaacaag
atgaccaagcgcaagcgtcaacaacgtatcgaacccttgtatgacagatataatgaaccc
aactcatggcgccttagtagacgccgtggttga
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