Fragaria vesca (woodland strawberry): 101308317
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Entry
101308317 CDS
T02666
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101308317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101308317
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101308317
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101308317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
101308317
NCBI-ProteinID:
XP_011469193
LinkDB
All DBs
Position
LG7:complement(7490724..7508194)
Genome browser
AA seq
2399 aa
AA seq
DB search
MLKFSQTTANQIRFLLQSLNDANSDSVLRELTQFIEYGIEGSILLLQTCLDHLNHYRIDI
KNVALERVLASLFKYLIDQPNFSTMFCESLRNTEVNEGIVENFSSALQLSVPEKIGIGLA
LSDSENLDTRICGKNFCMAQIEQLCETPVDKISSEKIQSIVLFLQRSEGLSKHVDSFMQM
LSLLQLKDDESSFVLSPLLSNELRDDNFLRNVDLFHESGENDFDAILAEMEKEMSMGDIM
KELGYGCTVDSSQCKEILSLFLPLNEITISKILGTIACTHAGLEDNQNTFSTFRLAMGYS
TSSDLPMLNTWNIDVLVDTINQLAPDTNWISVIENLDHEGFYIPNKEAFSFFMSVYQHVC
QEPFPLHAICGSVWKNTDGQLSFLKHAVSSPPEVFNFAHSVRQLPYVDAVNGHKLQLGHA
NHAWLCLDLLDVLCHLAERGHALSVRSILEYPLQHCPEVLLLGMAHINTPYNLLQYEVSF
IVFPMIVKNVMGNGMIVHLWHTNPSLVLRGFMDTYNSDPESMTRILDICQELKILSSVME
MIPSPFSIRLAALAFRKELVELEKWLNSNLITYKDTFFEECLKFLKEIQAGGTQDFSTRP
FQHSGAVSTLYGDTTATFSKVLKAHVGQITSSHLTEDLEKLSVSIMDSNPRLPNGGSTES
STDGYADDIETEANSYFHQMFSGQLTIESMVQMLARFKESSVQREQSIFECMIANLFEEY
RFFPKYPERQLKIAAILFGSVIKQQLVTHLTLGIALRGVLDALRKPADSKMFVFGTMALE
QFVERLIEWPQYCNHILQISHLRNTHSELVVFIEQALARISSGNSDPEGSNHASAVHHHG
PSQVTSGNVELNGSSILPTGQTLSSSLQLQQRHESSLDDRLKSSTSSNEVKPLLSSAMQP
AAPVGDAPSIQKLQIAVSAPSMLSTVSPGLVRPSRGATSTRFGSALSIETLVAAAEKRDA
PVEAPAEIQDKVLFIVNNISLANIEVKSKEFSEILKEQYYPWFAQYMVMKRASIEPNFHD
MYLKFLDKLNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDLKEITPTSLLKNRTRELEGNPDFSNKDVGATQPQIA
EVKSGIISPLNQVELPLDVAPSNSGSHTHLLSQYATLMEDDKLALGLSDQITSAQGLLQA
SPSQSPFSVSQHPTAIPNIGTRVVINQKHSGLGGLHVHFQRVVPIAMDRAIKEIVSGIVQ
RSVSIATQTTKELVLKDYAMESDDTRILNAAHLMVASLAGSLAHVTCKEPLRSSILSQLR
NSLQGLNIASEYLEQAVQLVTNDNLDLGCAVIEQAATDKAVATIDGEIGQQLSVRRKREG
VGATYFDANMYPQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRIPWQNQSIQSSHVLPVA
TTASSGSAGLTSTYGSASGQLNTGYSPGPGSKFEAVSRPLDEVMESNSALHLSASSIHVG
VGDGVSHDSSENDSVVGSFPSAASAPELHSVESSDAVKESGVSSQPLPSPAVTERLGNLS
EPSLSTGAALEKYQIVAQKLEALVTDDARESEIQGVIGEVPDIILRCVSRDEAALAVAQK
VFKGLYENASNQIHVGAHLAMLTAIRDVCKLVFTQLTSWVIYSDEERKFNKEITVGLIRS
ELLNLAEYNVHMAKLIDGGKNKAATEFATSLIQTLVIEEYKVISELRNLVEALFKVAAKP
GSPESLQQLVETIKNPAANVAALSGINVGKDDKARQSREKKAPVHSPGSREEFSIVESAE
PDPPGFPEQVKDVFAQWCRFCELPGANENNCSHFILNLHSIGILKDDLTDRFFRLLTEIS
VEHCLSSEVINSGTLQTPQQAQSLSFLAIDIYAKLVFSILKMEQGSSKLILLSKILAVTV
RFIQKDAEEKKSSFNARPYFRLFVNWLLDLGSLDPVIDGANFQILIAFANAFHALQPLKV
PTFSFAWLELVSHRSFMPKMLAGNGQKGWPYIQRLLVDLFQFMEPFLRNAELGAPVHFLY
KGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKI
DLLAEITQSPRVLSEVDAALKVKQMKTDVDEYLKTRQQGSSFLTELKQKLLLLPTEASSA
GTRYNVPLINSLVLYVGMQAIQQLQTRTPHAQANQTGPFVYLVGAALDIFQTLIGDLDTE
GRYLFLNAIANQLRYPNTHTHYFSFIVLYLFAESNQQEIIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPRYNFWNRAFIRCAPEIEKLFESVSRSCGAKPVDESMVSGWVPETAH
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagttttcgcagaccactgcgaaccagattcgcttcctcctccaaagcctcaac
gacgccaactccgactctgttctccgcgagctcactcagtttattgaatatggaattgag
ggaagcattttgctgctccaaacctgcctggatcatctgaatcattacagaatagatata
aagaatgtggcactggaacgggttcttgcctcacttttcaaatatctcattgaccaacca
aatttcagtactatgttctgtgaatcactaagaaatacagaggtcaatgaaggaattgtt
gagaatttctcgagtgcattgcaactgtctgtacctgagaaaattggcattggtcttgcc
ttgtcagattcagaaaacctagacaccagaatatgtggcaagaacttctgtatggctcag
attgagcaattatgtgaaactcctgttgacaagatctcttccgagaaaattcagagtatt
gttttgttcctccagcggtctgagggtctttccaagcatgtagattcctttatgcagatg
ttatctttactgcagctgaaagatgatgaaagctcatttgtgttaagtccattgctttca
aatgagcttcgtgatgacaattttttgaggaacgtggatttgttccatgaaagtggagaa
aatgattttgatgcgattttagctgaaatggagaaggagatgagcatgggagatattatg
aaggaattaggttatggatgcacagttgattcatcccagtgcaaagagattttatccctt
ttcttacctctcaatgagattactatctccaaaatacttggcacaattgcctgcacccat
gctggtctcgaggataatcagaatacgttttcaacctttcgattggcaatgggttacagc
acttcatctgatttgcctatgctaaacacctggaacattgatgtcctcgtggatacgatc
aatcaacttgctccggacaccaactggataagtgttattgaaaatttggatcacgagggc
ttctacattcctaataaggaggcattctcttttttcatgtctgtatatcagcatgtctgt
caggagcccttccccctacatgctatctgtgggtctgtttggaagaatactgacggtcag
ctatcatttctcaaacatgctgtttcatcaccacctgaagtatttaactttgctcactct
gttaggcagctgccctatgtggatgcagtgaatggtcacaagctacaacttgggcatgca
aatcatgcatggttgtgtctagaccttttggatgtactttgtcacctagcagagaggggt
catgctctttccgttcgatcgatacttgagtatcctcttcaacactgtcctgaagtcctg
cttcttgggatggcacatattaatactccatacaacctgctgcaatatgaagtgtctttt
attgttttccccatgatagtaaaaaatgtcatgggcaatggcatgatcgttcacctctgg
catactaacccctctttggtgctccggggatttatggatacttacaatagtgatccagag
agcatgactaggatattggacatctgtcaagagcttaagattttgtcgtccgtcatggag
atgattccttctccctttagtatcagactggcggcccttgctttcagaaaagagcttgta
gaactggagaagtggttgaacagtaatttgattacatataaagatactttctttgaggag
tgcctcaagttcctaaaggagattcaagctggtgggacccaagatttctctaccagacct
ttccaacattctggtgctgtctcaactctctatggggacactactgctaccttctcaaag
gttctgaaagctcatgtcgggcagattacttctagccaccttactgaggacttggagaaa
ctctctgtgtcgattatggattctaatccaaggctaccgaatggtgggtctacagagtca
tcaacagatggatatgcagatgatattgaaactgaagccaactcttacttccatcaaatg
ttttctggtcagttgactattgaatcaatggtccaaatgcttgctcgtttcaaagaatct
tctgtacaaagggaacaatccatttttgagtgcatgattgccaatctgtttgaggagtat
agattctttccgaagtatcctgaaagacagctcaaaattgccgcgattttatttgggtct
gtcatcaagcagcagcttgtaactcatctgactctagggattgctctgcgtggtgtttta
gatgcattgcgcaaacctgcagattcaaaaatgtttgtgttcggaaccatggctttggag
cagtttgtggagcgtctgattgagtggccacagtattgcaatcacattcttcagatatcc
catttgcgcaatactcattcagagctggtggtattcattgaacaggctcttgccaggatt
tcttccggcaattcagatccagagggaagtaaccatgcttctgcagttcatcatcacggc
cccagtcaagttacctcaggaaatgtggagttaaatggatctagcatcttaccaactggg
cagacgctatcttcttcactccagctccaacagagacatgaaagctctcttgatgatcgt
ctcaagtcctcaacttcatcgaatgaggtaaaaccacttttatcttctgcgatgcaacct
gcagctcctgttggtgatgctccgagtattcagaagttacaaattgcagttagtgctcca
tcaatgttgtccactgtttcccctggtcttgttcgtccatcacgaggagctacctctacc
aggtttggctccgctttgagcattgaaacattggttgcagcagctgagaaaagagacgct
cccgttgaggctccagcagagattcaggacaaagtattatttatagttaataatatatca
cttgctaatattgaagtcaagtcaaaggagttctctgagatactgaaagagcaatactat
ccttggtttgcacagtatatggttatgaaaagggcaagcattgagccaaattttcatgac
atgtatctgaaatttctggacaaacttaattcgaaggctttgaataaagagattgttcaa
gccacgtatgagaactgcaaggttcttctagggtcggagcttataaaatcaagctcagag
gagcgttcgttgttaaaaaatttaggtagctggcttgggaaacttacgatcggaaggaat
caagtcttaagggctcgtgaaattgatcccaaatctttgatcatagaggcatatgagaaa
ggtttgatgattgcagtcatacctttcacttcaaagattttggaaccatgtcagagtagc
ctggcgtatcaaccaccaaatccctggacaatgggtattcttggattacttgctgagatc
tattccatgccaaacttgaagatgaacctcaagtttgatatagaggttctattcaagaat
ctaggagtggatttgaaggagataacaccaacttctcttctcaagaatcgcaccagagaa
cttgaagggaatcctgatttctccaacaaagatgttggagcaacccaaccacaaattgct
gaagtaaaatctggaattatctctccactaaaccaagttgagctaccacttgacgttgct
ccatctaattctgggagccacacacatttgttatctcagtatgctacgttgatggaggat
gacaagcttgctttgggattatctgatcagatcacttctgctcaaggactgttacaagct
tctccctcacagtccccattttctgttagtcagcatcccacagcaatacctaacattgga
acccgcgtagttatcaaccaaaaacacagtggcttgggggggttgcacgtgcatttccaa
agagtggttccaattgctatggatagagctatcaaagaaattgtctctggtattgttcag
cgcagtgtttctatagctactcagacaactaaggagcttgtgttaaaggactatgccatg
gaatcagatgacacaagaatattgaatgcagctcacttgatggtcgcaagtttggccgga
agtcttgcacatgtaacatgcaaggaacccttgaggagttcaatattaagtcagctaaga
aattctcttcagggattaaacatcgcaagtgaatatctagaacaagctgttcaacttgta
accaatgataatctggatcttggatgtgcagtcattgagcaggctgctacagataaggca
gtagcaacaattgatggtgagataggtcagcagctttcagtaagaagaaagagagaaggt
gttggtgcaacctattttgatgctaacatgtatccacaaggttctatgggtgttgtgcca
gaagctctccgccctaaacctggtcatttgtccctttctcaacaacgagtgtatgaggat
tttgttcggattccctggcaaaaccaatctattcaaagttcgcatgttctgccagttgct
accacagcttcatctggtagtgccggtctcactagcacatatggttcagcatccgggcaa
cttaacacgggctactcaccaggacctggaagcaaatttgaagctgtttctcgtccattg
gatgaagtgatggaatccaattctgccctccatcttagtgcttcatctattcatgttggg
gtgggcgatggcgtttcccatgatagttctgaaaatgattctgttgttggctcatttcct
tccgctgcttctgcccccgagctgcactctgtagagtcatctgatgctgtaaaggaatct
ggagtatcttcacagccactgccttcacctgctgtaactgaacgtcttggaaatctctca
gagccttccctcagcacaggggctgcattggaaaaataccagattgttgcgcagaagttg
gaagccttggtaactgacgatgctagagaatcagaaatccagggagtcattggtgaagtg
cctgatattatactcagatgtgttagtcgagatgaggctgccttggctgtggctcaaaag
gttttcaagggtttgtatgagaatgcatcaaaccagattcatgttggcgctcatctcgca
atgcttactgcgattcgtgatgtttgcaagcttgtttttactcagctaaccagttgggtg
atttattctgacgaggagcggaagtttaacaaagaaattactgttggccttatacgcagt
gaattgctaaaccttgcagagtacaatgttcacatggcaaaacttattgacggtggcaag
aataaggcagcaacagagtttgccacttccttgatccaaactttggtgattgaagaatat
aaagttatctcagaacttaggaatcttgttgaagcattgtttaaggttgctgcaaagcct
ggatctcctgagtcactgcagcagctggttgaaactatcaagaatcctgctgcaaatgtg
gctgctctatctggtattaatgttgggaaggacgacaaggccagacaatcgagagagaag
aaggcccctgtccactccccgggaagcagggaagagttcagtattgtggagtctgcagaa
ccagatccacctggttttcccgagcaggtgaaagatgtgtttgctcagtggtgccggttt
tgtgaacttcctggtgcaaacgaaaataattgttcccattttatcttaaatttgcactcg
attggcatcctgaaggatgatctgacggaccggtttttccgactactcacagagatttct
gttgaacattgtctatcttctgaggtgattaattcaggcacactgcaaactcctcagcaa
gcgcagagtctatccttcctggccattgatatttatgctaaacttgtattttcaattctc
aagatggagcagggatccagtaaattgattctcttgtccaagattttggcagtcacagtg
agattcattcagaaggatgcagaggagaagaaatcgtctttcaatgcaagaccatatttt
agattgtttgttaactggttgctagaccttgggtctttggatcccgttattgatggtgct
aactttcagatattgatagcctttgcaaatgcgtttcatgcgttgcaacccctcaaagtt
cctacattcagctttgcatggctcgagctggtgagtcataggagtttcatgcctaaaatg
ctagctggaaatggtcagaagggttggccctatatccaacgtttgctggtcgacttattt
caattcatggagccatttttgaggaatgctgaactaggagctccggttcatttcctatat
aaaggtacccttagagtgctacttgtgctgctccatgatttccccgagttcctttgtgat
tatcacttcactttctgtgatgttattcccccaagttgcattcaaatgcgaaatatcata
ctcagtgcgtttccccgtaacatgaggcttcctgacccatctactccgaatttaaagatt
gatttgcttgctgaaatcactcaatctccacgagttctttctgaggttgatgcagctttg
aaagtaaagcagatgaaaaccgatgtggatgagtatctcaagacaaggcaacaaggctcc
tcatttttgactgaattgaagcaaaaattgctccttttaccaaccgaagcttcctcagcc
ggtactcgttacaatgtacccctcatcaactcccttgtactctatgttgggatgcaggct
atccagcagcttcagactagaacaccgcacgcacaggcaaatcaaactggtccctttgtg
tatttggtaggggctgctttggatatcttccagactctgataggggacctagatactgaa
ggacgataccttttcctaaatgcgatagcaaaccaactgcgctatccaaacacccataca
cattacttctccttcattgttctttacttgttcgcagagtcaaaccagcaggaaattatc
caggagcaaatcacaagggtcttgttggaacgtctcattgttaatcgtccacatccatgg
ggtctactgatcacattcattgagctaatcaagaatccgaggtacaacttctggaaccga
gctttcattaggtgtgcaccagagattgaaaaactctttgaatctgtatcgaggtcttgt
ggggcaaagcctgtggatgagagtatggtttcaggttgggtacctgagactgctcactga
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integrated database retrieval system
