Fragaria vesca (woodland strawberry): 101308325
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Entry
101308325 CDS
T02666
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve00040
Pentose and glucuronate interconversions
fve01100
Metabolic pathways
Module
fve_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101308325
Enzymes [BR:
fve01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
101308325
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
101308325
NCBI-ProteinID:
XP_004289263
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Position
LG1:11964986..11969933
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AA seq
471 aa
AA seq
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MVMMEVMVMVSSNGASSSSFSLLDDKGWNRWMNGKMMKLCVYEMRWVEGKSDEFGGDGSE
VMAEIKKQRRKMTKLTSCFAIVVFISLHILYQSSASGDQNSTSTYNVLKFGAKRNGVTDS
TQAFLETWSAACGTSSDSSEIYVPKGRYLLGAMAFKGDCNSHVTFRIDGTLVASPDYRVL
GQANNWFSFEGVSGVTIIGGALDAKGSALWACKLSTKTTSCPNGATTLSFTNSKDIRVEG
LMSLNSQMFHIVINGCQDVLIQGVKVIAAGNSPNTDGIHVQFSKNVAIFDTSIKTGDDCV
SIGPGTKDLWMERIFCGPGHGISIGSLAKDLVEEGVQNVTLKNAIFKGTQNGLRIKSWAR
PSTGFVQGVQFLDVKMINVQNPIIIDQNYCPHNLNCPGQVSGVKVSDVLYQNIRGTSATA
VAIKLDCSAENPCSGVRLENVNLTCRKQAIQSYCTNVNGKSVGTVQTSSCL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgatggaggtgatggtgatggtgtcctcaaatggtgctagctcctcttccttc
tccttgcttgatgataaaggatggaatagatggatgaatggcaaaatgatgaagctttgt
gtatatgagatgagatgggtagaagggaaaagtgacgaatttggaggtgatggtagtgag
gttatggcagaaatcaaaaaacaaagaaggaaaatgactaagcttacaagttgttttgcg
atagttgtgttcatttctctacatattctataccaatcatctgcctctggtgatcagaac
agtacaagtacatataatgttctcaagtttggagcgaagcgcaatggtgtaaccgactca
acccaagcttttctcgaaacctggtctgcagcatgtggcacctcttcagattccagtgaa
atatatgtaccaaaggggaggtatttgcttggcgctatggcctttaaaggtgactgcaac
tcacatgtcacttttcggattgatggaacactcgtggcttcgcctgattaccgagtatta
ggccaagcgaacaactggttcagctttgaaggagttagcggggtgacaataatcggaggg
gcacttgatgccaagggctccgccctgtgggcttgcaagttaagcactaaaaccactagc
tgtcctaatggagccacgactttgagtttcacaaactccaaggacattagagttgaagga
ctaatgtcattgaacagccaaatgtttcacattgtgataaacggctgccaagatgtactc
attcaaggcgtcaaagtcattgctgctggcaatagcccaaacaccgacggcatccatgtc
cagttctcaaaaaatgttgcaatcttcgacacctccatcaaaactggggacgattgtgtc
tctattggccccggcaccaaggacttgtggatggaacgcatattttgcggacctggccat
ggcattagcattgggagcctggccaaagatttggtagaggaaggagtccaaaatgtaaca
ctcaaaaatgcgatttttaagggtacccaaaatggtctgaggatcaaatcctgggcaaga
cccagcacagggtttgtacaaggtgttcaattccttgacgtcaaaatgattaatgtccaa
aaccccattataatcgaccaaaattactgtccacacaacctcaactgtcctggtcaggta
tcaggtgtcaaagttagtgatgtactgtaccagaacattagaggaacatcagcaacagca
gtcgcaataaaacttgattgtagtgcagaaaatccatgcagcggagtaagactggaaaac
gtgaatttgacttgccggaagcaagcgattcaatcatattgtacgaatgtaaatggaaag
agtgttggcactgtgcaaacaagcagttgtttgtaa
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