Fragaria vesca (woodland strawberry): 101308454
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Entry
101308454 CDS
T02666
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fve03016
]
101308454
Enzymes [BR:
fve01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
101308454
Transfer RNA biogenesis [BR:
fve03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
101308454
Prokaryotic type
101308454
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
101308454
NCBI-ProteinID:
XP_004296032
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Position
LG3:20830046..20832978
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AA seq
537 aa
AA seq
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MGLRTLLSFPSLCSKLFHFFFQFVELCKMAMSLLRLPLSLWLPKHRSVRYEYPKIPSRLN
VICCCSTSAATAEESLTHAERWESVRKRKVVLRVGYVGTDYRGLQIQRDDPSISTIEKEL
ETAIFKAGGIRESNFGNLNKISWARSSRTDKGVHSLATMISLKMEIPENAWDGDPYGIAL
VNHINSYLPRDIKVFSAVPAQRSFDPRKECNLRMYSYLLPADVIGIKSHFSAAEIEDHIA
DFNDILNAFEGEHPFHNYTIRSKYRMKLPGKKSPIYRNMSKTERSTVEASSSELEGSDDE
DKFKGRNSSETEVLNQNSSMSSNGNEILLHACKKQEDVLKEKSTDSVVYAKWLYEPDESD
RIGASHFRKIFRCSCGKLEKSLTHEYVELSIWGESFMLHQIRKMVGTAVAVKRKLLPRDI
LTLSLAKFSRIILPLAPSEVLILRGNRFSIRERPGNVKRPEMIAMVESEEVIKQVDEFFT
SVMLPQVAKFLEPSGYPWQEWIENLDRNTGIPDRELDEVRNAWKVWKEKFESDASAL
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgggcctaaggacacttttgtcttttccatctttgtgttcaaaactcttccattttttc
ttccaatttgtggaactctgtaaaatggctatgtctttactgcgactcccgctctcgctt
tggctgccgaagcaccggagcgtgcgttatgaatacccgaaaataccctcgagattgaac
gttatttgctgctgctctacctccgctgccaccgccgaagaaagcttaactcacgctgaa
agatgggaatcggttcggaagaggaaagtggttctccgggtcgggtatgtgggcaccgat
taccgaggtctgcaaattcaaagagacgacccttcaatatccactattgagaaggaactg
gagactgccatattcaaggccggtggtattcgtgagagtaatttcggcaacctgaacaaa
atttcgtgggccagaagtagccgaaccgataagggagttcactccttggcgacaatgata
tcgttgaaaatggaaattcctgaaaatgcgtgggatggagacccttatggcattgctctt
gtgaatcacatcaactcttaccttcctcgtgatatcaaggtttttagtgctgtacctgcg
cagaggagctttgatcccagaaaggagtgcaatcttcgtatgtattcatacctccttcct
gctgatgttattggaatcaaaagtcacttcagcgcagctgaaattgaggatcacattgca
gacttcaatgatatattaaatgcttttgagggtgaacatccttttcataactatacaata
cgatctaaataccggatgaaacttcctggaaagaaatcaccaatataccgtaatatgtca
aaaacagaaagatcaactgttgaggcatcatcatccgagcttgagggaagtgatgatgaa
gataagttcaagggaagaaattcatcagaaactgaggtactgaaccaaaattcttctatg
tccagcaatgggaatgaaatcttactgcacgcttgcaagaagcaggaagatgttctgaag
gagaaaagtactgattcagttgtctatgcaaaatggttatacgaacctgatgagagtgat
agaatcggtgcttcccatttcagaaagatatttcgctgttcttgcggaaagcttgaaaaa
tcgctgacgcatgagtatgttgagctttccatatggggagaatctttcatgttacatcaa
attcgcaaaatggttgggactgctgtggccgtgaagcgcaagttactcccaagagatatt
ctgacattgtcactggctaagttctcacggataatcctaccccttgccccatctgaagtt
ttgatcttaagaggaaacagattttcaattagagaaagacctggaaatgtaaaaagacct
gaaatgattgcaatggtcgaatcagaagaagttatcaaacaggttgatgagttcttcaca
tctgtgatgttgcctcaagttgcaaaattcttagaaccttcaggatatccttggcaagaa
tggattgaaaacctggatagaaacacaggtattccagatagagaattggatgaagtcaga
aatgcttggaaagtgtggaaggaaaagtttgagagtgatgcatcagccctatag
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