Fragaria vesca (woodland strawberry): 101308548
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Entry
101308548 CDS
T02666
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101308548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101308548
03041 Spliceosome [BR:
fve03041
]
101308548
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101308548
Spliceosome [BR:
fve03041
]
Complex B
Other components
Prp19-related factors
101308548
Complex C
101308548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
DUF5575_C
Motif
Other DBs
NCBI-GeneID:
101308548
NCBI-ProteinID:
XP_004293507
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All DBs
Position
LG3:complement(3406497..3411162)
Genome browser
AA seq
921 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPYSLKLWWRYLIARSDAPFKKRRTIYERAVKSLPGSY
KLWHAYLRERLELVRSFPINHSEYETLNNTFERALVTMHKMPRIWILYLQSLTEQRLVTR
TRRSFDRALCALPVQQHDRIWELYLVFVSQKGMPIQTSLRVYRRYLLYDPTHVEDFIAFL
IDSELWQEAAERLASVLNDDQFRSIKGKTKHRLWLELCDLLTKNATAVSGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIKRSLFEKARDVFEEGMQTVVTVRDFSVIFDAYAQFEESML
AIKMETLGSDEEEEEEEKGENGRMEDDGSEEEEEEDVRTNVELSVAELEKKILHGFWLHD
ENDVDLRLARLDHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTQAVK
TVDPMQAVGKPHTLWVAFAKLYETHGDLANARVIFDKAVQVNYKTVDNLASLWCEWAEME
LRHKNFKRALELMSRATAEPSVEVKRRVAADGNQPVQMRLHKSLRLWTFYVDLEESLGTL
ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFKVYEKGTQIFKYPHVKDIWMTY
LSKFVKRYGKNKLERARLLFEDAVKAAPADAKKPLYLQFAKLEEDYGLAKRAMKVYDEAT
KAVPNNEKLSMYEIYIARAAEIFGIPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLG
EIDRARGVYIFASQFSDPRSDAEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHF
ILPEYAMQKDQRLSVDEAKDKLKQAGVPEDEMAALERQLAPVIRDTPSKDSNRKVGFVSA
GVESQTDGGIKVAANHEDIELPEESDSEDEANVEIAQKEVPAAVFGDLANKRKDIEDDEG
GGKDGESRLGALERIKRLKKV
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctctcaggagctctacccctcccaagacgacctcctctacgaagaagagctt
ctccgaaacccttacagcctcaagctgtggtggcgctacctaatcgcccgatccgacgcg
ccgttcaagaagcgccgcaccatctacgagcgcgccgtcaagtccctccccggaagctac
aagctttggcacgcctacctccgcgagcgcctcgaactcgtccggagcttcccgatcaac
cactccgagtacgaaaccctaaacaacaccttcgaaagggccctggtcacaatgcacaag
atgccgcggatttggattctgtatctccagagcctgacggagcagagactggtcaccagg
actcgccggagcttcgacagggcgctgtgcgctctgccggtgcagcagcacgaccggatt
tgggagctctatttggtgtttgtgagccagaaaggtatgccgatccagacctcgcttcgg
gtctaccggaggtacttgctttacgatcctactcatgttgaggatttcattgcgtttttg
attgactctgagctgtggcaagaggcggcggagcggctggcctcggtgctcaatgatgat
cagtttaggtcgattaaggggaagacgaagcataggctgtggttggagttgtgtgatttg
cttactaagaatgccacggcggtttcggggctgaatgtggatgctatcattagaggcggg
attaagaagtttacggatgaggtggggaggctgtggacgtcgctggcggattattatatt
aagaggagtttgtttgagaaggctagggatgtgtttgaggagggtatgcagactgtggtg
actgttagggattttagtgtgattttcgatgcgtatgcgcagtttgaggagagtatgctt
gcgattaagatggagacgttggggagtgatgaggaggaggaagaggaggagaaaggagag
aatgggaggatggaagatgatggaagtgaagaggaggaggaggaagatgttcggaccaat
gtggagttgtccgtggctgagcttgagaagaagatactccacgggttttggctacatgat
gagaatgatgtcgatttgaggttggcgcgattggaccatcttatggatagaagacctgaa
ctggctaatagtgtgcttttgagacagaatccgcataatgtagagcagtggcatcggaga
gtgaagctctttgagggaaatcccacgaagcagatacttacatatacccaggctgtgaag
actgtggatccaatgcaagcagtggggaagcctcatactttgtgggttgcttttgctaag
ctgtatgaaacacatggcgatcttgcaaatgcaagagtcatttttgataaggctgtccag
gtgaactacaagacagtggacaatctggctagtctgtggtgtgagtgggcagaaatggaa
ttgcggcataagaattttaaacgggccctggaactgatgagtagagctacagcagagcca
tctgttgaggtcaaacgaagagttgctgctgatgggaatcaaccagttcagatgaggctc
cataaatcattgaggctttggaccttttatgtggacttggaggagagcttaggtacacta
gagtctacacgggcagtgtacgaacggatattggatttgagaatagccacccctcaaatt
ataatcaactatgcattgcttctcgaagaacataaatactttgaagatgcattcaaagtt
tatgaaaaaggtactcaaatattcaagtacccgcatgtcaaagacatatggatgacatat
ctctccaaatttgtaaaaagatatgggaagaataagctggaacgtgcgagactgctcttt
gaggatgctgttaaagcggcccctgctgatgcgaagaaacctttatatcttcaatttgca
aagctggaggaggattatgggttagcaaagcgggcaatgaaggtttatgatgaagcaact
aaggctgttccaaacaatgaaaagttgagcatgtatgaaatatatatagcccgtgcagct
gagatttttgggatccccaaaacaagggagatatatgagcaagcaatagaatccggtctc
cccgacaaagatgtgaagacaatgtgcttaaagtatgctgagcttgagaagagcttgggc
gaaattgatcgtgctcggggagtttatatatttgcatcacagttttcagatccccgatca
gatgcagaattctggaacaaatggcacgagtttgaggtccaacacgggaatgaagataca
tttagagaaatgcttagaatcaaacgaagtgtttctgcaagctatagccagacacacttt
attctacctgagtatgcgatgcaaaaggatcagaggttgagcgttgatgaggcaaaagac
aaattgaaacaagctggagtcccggaagatgaaatggctgctcttgagaggcagttggct
cctgtgatccgtgatacaccctctaaagacagcaacagaaaggtgggctttgtgagtgct
ggagtagaatcacagactgatggagggataaaagttgctgcaaatcacgaagacattgaa
ctaccagaagaaagtgattctgaagatgaggcgaatgttgaaattgcacaaaaggaggtc
ccagctgctgttttcggagatttggctaacaagagaaaggatattgaagatgatgagggt
ggaggtaaggacggtgaaagccgccttggtgcacttgagagaataaagaggctaaagaaa
gtatga
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