Fragaria vesca (woodland strawberry): 101308806
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Entry
101308806 CDS
T02666
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101308806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101308806
03009 Ribosome biogenesis [BR:
fve03009
]
101308806
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101308806
Spliceosome [BR:
fve03041
]
Complex A
U2 snRNP components
U2 related factors
101308806
Complex B
101308806
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101308806
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
90S particles
Helicases
101308806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
T2SSE
ABC_tran
AAA_7
AAA_30
AAA_16
Motif
Other DBs
NCBI-GeneID:
101308806
NCBI-ProteinID:
XP_004288547
LinkDB
All DBs
Position
LG1:20549967..20554099
Genome browser
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDESTVAAAKMNKLNGGGGGAMNQNPMSSVINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFFQALKKSQSLILVGETGSGKTTQIPQFVLEAVDPSSDKSRKMVA
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP
LLERYSVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPL
MKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRKIN
KEISNLGDQVGPVKVVPLYSTLPPAMQQKIFDAAPPPTTEGGPAGRKIVVSTNIAETSLT
IDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS
FHNDLVPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRIMA
RFNLKQCSTDFKSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLEKLYRKRDD
KEDNRNRK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggtactgagaggaagaggaaggtgagcttgttcgacgtggtggacgagagcacagta
gcggctgcgaagatgaacaaattgaacggcggcggcggcggcgccatgaatcaaaatccg
atgagcagtgtgatcaataggtggaccggaaagccatactcgcaaaggtactatgagatc
cttgagaagaggaagactttgcctgtttggcaccagaaggaggagttctttcaggccctc
aagaaaagccagtcgctgattttggttggtgagactggtagtggtaaaaccactcagatc
cctcaatttgttttggaagctgttgatccgtcttcagataaaagcaggaagatggttgct
tgtacccagcctcgtagggtggctgcaatgtcagtctctcgccgtgttgctgaagagatg
gatgttaccattggcgaagaggttggttatagcattcgttttgaagactgcagcagtgcc
agaacagtattgaagtatctgacagatggtatgcttttaagagaagcgatgacagatccc
ctgttggaacgatacagtgtaattattcttgatgaggctcatgagaggactttagcaaca
gatgttctgtttggtcttttgaaggaagtattgaaaaatagacctgatttgaaactggtt
gttatgagtgctacacttgaggctgagaagtttcagggttacttcaatggtgcaccacta
atgaaggttcccggcaggcttcatcctgttgaaattttttacactgaggaacctgagagg
gactacctggaggcagcaattcgaactgttgtacagattcatatgtatgagactccagga
gatatacttgtttttctaaccggagaagaggagatagaagatgcatgccgcaaaatcaac
aaagaaatttcaaacctgggtgatcaggttggtcctgtgaaagtggtgcccttgtattca
actctccctccagctatgcagcagaaaatatttgacgctgctcctcctcccacaactgaa
ggaggtcctgcaggaaggaaaattgtggtgtcaactaacattgcagaaacttctcttaca
atagatgggatcgtgtatgttattgatccaggtttttctaaacagaaagtttataaccca
cgagtgcgtgttgaatccttgttggtatctccaatttctaaggctagtgcgcatcagagg
tcagggcgtgctggaagaactcagccaggcaaatgtttccgactttatactgagaagagt
tttcataatgatcttgtaccgcagacatatccagaaatactgagatcaaatcttgcaaat
acggtgcttactttgaagaaactaggaatagatgatttggttcattttgattttatggac
ccccctgctccagagacattaatgagagcacttgaggttttgaattatttgggtgcattg
gatgacgatggtaacttgaccaagctgggtgagataatgagcgagttccctctggatcct
cagatgtcaaagatgcttgttgttagccctgagttcaactgctcaaatgagattttgtcg
atttctgccatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagct
gctgacgaagcaaaagctaggtttggacacatcgatggagatcatctcacactgctgaac
gtgtatcatgcatacaagcaaaacaatgaggatccatcgtggtgctatgagaacttcgtc
aatcagagggcattgaagtctgcggacaatgttagacagcagttagtccgcattatggct
cggtttaatctcaagcaatgcagtactgattttaagagtcgggactactacatcaacatc
agaaaggctatgctagctgggtacttcatgcaggtggctcatctggaacgcactggtcac
taccttactgtgaaggataaccaagttgtacatttgcatccatcaaattgcctggatcac
aagccagagtgggtgatatacaatgagtatgtcttaacaagcaggaactttatccgcaca
gttacagatatccggggtgaatggctagttgatatagcaccgcactactatgatttggcc
aactttccccagtgtgaggctaagcgagttcttgagaagctttacaggaagcgggacgac
aaggaggataacagaaacagaaaatga
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