Fragaria vesca (woodland strawberry): 101309085
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Entry
101309085 CDS
T02666
Name
(RefSeq) small RNA degrading nuclease 1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101309085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fve03009
]
101309085
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
Pre-60S particles
RNases
101309085
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DUF3450
TMF_DNA_bd
Motif
Other DBs
NCBI-GeneID:
101309085
NCBI-ProteinID:
XP_004288001
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All DBs
Position
LG1:10518357..10521719
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AA seq
524 aa
AA seq
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MEDFLATAEKKVLVEIVKVAQKRGMKGSKGDWKQFLTSYDKKFGSSLSDPGKRSTDVLTS
FVRSFDNQDDLQLFARVVECNSNRQGVAQFLNNSPANESQEQKLVRVTLEHPQYPIDYAF
PSHNQDWVVTKLKKKSKEMISNVMLAVDCEMVLCEDGTEALVRVCVVDRNLEVKLDELVN
PDKEVADYRTEITGVAASELAGVTCTLADIQKSFKKLLSDGTILIGHSLCNDLQALKIDH
KMVIDTAYVFRYSDGPIYRKPSLNNLCKAVLGYEVRKKGSPHNCLDDACAAMKLVLAKVE
REVGDTIPSVQEDVPEINTAKLLLHRIPRTVPSNELHKAIPGNFTLEVKKPSIKAKGDIY
SAFATFKNEQEAQLAYEKLKGTQEEDSTGKPQKLIEFKVSTGVITDFYVRKMAHNGSLDQ
VSSKRALEVEENTGANKKQKTGQTIEDETMPDLDHCCDHLKEIERLKEEQEKLLKQCSDQ
LKDIEGLKQEIKNREYEISMLKKSQVPEEQEKRLHKKKDKKKRK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggaagatttcctcgccaccgcagagaaaaaggtgcttgtggagatagtgaaggttgcc
cagaagcgaggaatgaagggttctaaaggtgactggaagcagttcctgactagctatgat
aaaaaattcgggtccagcttgagtgaccctggtaaaaggtcaaccgatgtgttgacttct
tttgttaggagttttgataatcaggatgacttgcagctatttgccagagttgtagaatgc
aattcgaatcgacaaggtgtggctcagttcttgaacaactctcccgcaaatgagtcccag
gagcagaagcttgtccgtgtcactcttgagcacccgcagtatccaattgactatgcgttc
ccgtcacataaccaggactgggtagttacgaagctcaagaagaagtcaaaggagatgata
tcaaatgtgatgcttgctgttgattgcgagatggttctatgtgaagatggaactgaagct
ttagtgagggtgtgtgttgtggatcggaacttagaggttaaactggatgaactagtgaac
cctgacaaagaagttgccgattacagaactgagattacaggagtggctgcatcagagttg
gctggagttacttgtactttagctgatatacagaaatcgttcaagaagttgctgtcagat
gggactatcttaattgggcacagtttgtgtaacgacctgcaggcattgaagatagaccat
aaaatggtgattgataccgcatatgtatttagatactcggacgggcctatttatagaaag
ccttcgttgaataatttgtgcaaggctgtgttgggctatgaagttaggaagaaaggttct
ccacataattgtctagatgatgcctgtgctgcaatgaaacttgttcttgctaaggtggag
cgtgaagttggtgataccattccatcagttcaggaggatgtacctgaaattaatactgcc
aagctactccttcacaggataccaagaacagtgccttcaaatgagttgcataaagccata
cctgggaacttcaccttagaagtcaagaagccatcaattaaagccaaaggagatatatat
tctgcttttgctacatttaagaatgaacaagaagcgcagctagcatatgaaaaactcaaa
ggcacccaagaagaggactcaactggaaagccacaaaaacttattgaatttaaggtcagc
acaggggtaattactgatttctatgttcgtaaaatggcacataatggttccttagaccaa
gtctcttctaagagagctctcgaagttgaggagaacacaggtgcaaataagaaacaaaag
acaggtcagacaatagaagatgagactatgccagacttagaccactgttgtgatcatctc
aaagagatagaaagattgaaggaagaacaagaaaagctattgaaacagtgctcagatcag
ttaaaagatattgaaggattgaagcaagaaattaaaaatagggaatatgaaatttctatg
ctgaagaagagccaagttccagaagaacaagaaaaaaggctgcataagaaaaaggacaag
aagaaacggaaataa
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