Fragaria vesca (woodland strawberry): 101309282
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Entry
101309282 CDS
T02666
Name
(RefSeq) cyclic nucleotide-gated ion channel 2
KO
K05391
cyclic nucleotide gated channel, plant
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
101309282
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
fve04040
]
101309282
Ion channels [BR:
fve04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
101309282
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GFIT
Motif
Pfam:
cNMP_binding
Ion_trans
DUF3382
TMEMspv1-c74-12
DUF5981
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
101309282
NCBI-ProteinID:
XP_004306106
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Position
LG6:31377160..31380744
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AA seq
709 aa
AA seq
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MSSNFSLPRWTVFHRQQSSGPSDSDNSNNVVEDNPISISTSVVECYACTQVGVPVFHSTS
CDGAHQPQWEASAGSSLVPIQSRSDLKKGLRRNRLPVGPFGEVLDPRTKRVQRWNRAFLL
ARGMALAIDPLFFYALSIGRGGTPCLYMDGGLAAIVTVLRTCVDAVHLCHLWLQFRLAYV
SRESLVVGCGKLVWDARAIASHYVRSLKGFWFDAFVILPVPQAVFWLVLPKLIREEKIKV
IMTILLVIFLFQFLPKVYHSICLMRRMAKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCW
YVLAIQRVASCLKQQCELGGNCNLSLSCSQEVCYQSLIPDSMEAAPCGGNVTNGLRKPSC
LDVNGTFNYGIYQWALPVISSNSLAIKILYPIFWGLMTLSTFGNDLEPTSHWLEVIFSIC
IVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSGLRRRVRHYERH
RWVTMGGEDEMDLIKDLPEGLRREIKRHLCIDLIKKVPLFHNLDELILDNICDRVRPLVF
SKDEKIIREGDPVPKMLFIVRGRIKRSQGLSKGMVGTNVLEPGGFLGDELLSWCLRRPFI
DRLPASSATFACLESTEAFGLNASDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVN
IQFAWRRYRLRTRGPVIPVVTTEQNGGADRRLLQYAALFMSLKPHDHLE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccaacttctccctcccaaggtggacggtattccaccggcaacagagctccggc
cctagcgacagcgacaacagcaacaacgttgtggaagacaacccgatctcaatctccacc
tcggtggtcgagtgctacgcttgcactcaggtcggagttccggtcttccactcgaccagc
tgcgacggcgcccaccagcctcaatgggaggcctcggcggggtcttccttagtccctatc
caatcccgcagcgacctcaagaagggcctccgccgcaaccgcctccccgtggggcccttc
ggcgaggtcctcgacccgcgcaccaagcgcgtgcagagatggaaccgcgccttcctcctc
gcgcgtgggatggccctcgccatcgaccccctcttcttctacgccctctccatcggccgc
ggtgggaccccctgcctctacatggacggcggcctcgcggcgatcgtcacggtgctccgc
acgtgcgtcgacgccgtgcatctctgccacctgtggctgcagttccggctggcttatgtc
tctagggagtcgctggtggtcggctgcgggaagctcgtgtgggacgcacgagcgatcgcg
tcgcattatgttcggtccttgaagggcttctggttcgacgccttcgttattcttccggtt
cctcaggctgtgttctggcttgttcttccaaaattgataagggaagaaaagattaaagtg
ataatgacaattcttctagtaatattcttattccaattcctcccaaaagtctaccatagc
atctgcttgatgagaagaatggcaaaggttacaggatacattttcggcaccatttggtgg
ggttttggcctcaacctcatcgcctacttcattgcctcacatgttgctgggggatgctgg
tatgtgcttgcgatacagcgagtggcgtcctgcctaaagcagcagtgtgaattgggtggg
aattgcaatctctctttgtcatgctcacaggaagtttgttaccagtctctgataccggat
tccatggaagcagctccatgtggtggcaacgtgacaaatgggttgagaaagccttcctgc
ttggatgttaatggaacattcaactacggcatctatcagtgggctcttcctgtcatatct
agcaactcgctggctattaagatcctgtatcccatcttttggggcttaatgactctcagc
acctttggcaatgatcttgaaccaacaagtcactggctagaagtgattttcagtatatgc
attgtgctcagtgggttattgctcttcactttgctcattgggaacattcaagtgtttctg
cacgcggtaatggcaaagaagaggaaaatgcagctgaggtgtagagacatggaatggtgg
atgagaagaaggcagttgccatctggtttgcgacgaagagttagacattatgaacgccat
agatgggtgacaatggggggagaagatgagatggatttgatcaaagacttgcctgaaggt
cttcgaagagaaattaaacgccacttatgcatagacctcataaagaaggtacctctgttc
cacaacttggatgaacttattcttgacaacatttgcgaccgtgttaggcctctagtcttc
tctaaagacgagaagataattagagaaggagatcctgtgccaaagatgctattcattgtg
cgtggacgcataaagcgaagccaaggcctaagcaaaggcatggtgggaaccaatgtgctt
gaaccgggtgggtttctaggcgatgagctgctctcatggtgcctacgacggcccttcata
gaccgccttccagcctcatctgctacatttgcttgccttgaatcaacagaagcatttggc
ctcaatgcaagtgacctcagatacattacagaccacttccggtacaaatttgcaaacgag
aggctcaagaggactgcaagatactactcttccaattggagaacatgggctgctgtaaat
atacaattcgcttggcgccgctacaggctgaggactagaggtcctgtgattcctgtagtg
accaccgaacaaaatggaggcgctgatcgtaggctcttgcagtatgctgcattgttcatg
tcacttaagccgcatgatcatcttgagtaa
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