Fragaria vesca (woodland strawberry): 101309405
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Entry
101309405 CDS
T02666
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101309405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101309405
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101309405
Spliceosome [BR:
fve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101309405
Complex C
U4/U6.U5 tri-SnRNP related factors
101309405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
101309405
NCBI-ProteinID:
XP_004308683
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Position
LG7:12719800..12721890
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AA seq
754 aa
AA seq
DB search
MNHDHLKITVIHLNILHKRSNINLVLTSLRRSLFKVLLYRPNFFFALYIHCIYWQLICKA
WLRVCVKIGSEPNKSDPNKKRRRSEAWSQDVDEEIPSQQKDQVRSITTWPEDDEQLQQLE
KLQEDRKSLQIYRYRDALLDIVQRNQVVIICGQIGCGITTQIPQYLLETGYGKEGKIGCT
QPHGVVAMSAASRVSKEVGVELGHEVGYSISFEDCTSEKTVLKYTTDEMLLHQLYREPDL
ISYSVLMVDGAGERTLSTDILLGLLKDIIRFRTKLKVIICTGTTDHVEKLSGFFNKVPIF
KIPIRMSNGHTIEYIKAPVADYLDVAIDTVLRIHATEPTGGDILVFLTDHEEIETAEEEL
KLRAGLAEELIICPVHEYLHVELQAKVFKPTPQGARKVFFSTVAIDRVKYVIDPGFCKRK
CYNPRTGMELMQVARISKATALQRMLVSERGNRMAPAKCFCLYTDCTYDKDFSEITVPEI
QWTNLANVVLRLLHLGVNLSQFEFIDPPPAEALTKASEVLLILGATNTEGELTWVGVQMA
DIPLHHMLSRALVASIEYKCSAEVISIVAMLSSGDASVFCQPRDKAVDADNARLHFQSEI
VGDHIALLKVYNAWEETNYSTQWCHENYIRVRSMRRARYVRDKLDQLLEKVGIKLTSNRD
NLESIKKAITSGFLPHSAKQQINRSYRTVKEPDSPSIRIHPNSGMAQVLPRWVVYHDLVP
TTGEYMRQVTEIKPEWLVELAPHYYRLEYALDVV
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgatcacctaaaaataacggttatacatctcaacatcctgcacaagcgatca
aatatcaatctggttctcactagtctcaggcggagtttgttcaaggtgttgctatatcgc
cccaattttttcttcgctttatacatccattgtatttattggcaactgatctgcaaagct
tggttgcgagtttgtgtgaagattggttctgagcccaataaatcagatcccaataagaaa
aggcgtcgtagtgaggcttggagtcaagatgttgatgaagagattccttcacaacagaaa
gatcaagttagaagtataacaacttggcccgaggatgatgagcaattgcaacaactcgag
aagctccaggaggatagaaaatcactacagatataccgttatcgtgatgcattgctcgac
attgttcaacgcaatcaggttgttattatttgtggccaaattgggtgcgggattactaca
cagataccccaatatttactcgagactggatatggcaaagaagggaaaattggatgcaca
cagccgcatggggttgttgctatgagtgctgcttccagagtttctaaagaagtgggtgtc
gagctcgggcacgaggtgggatattccatttcttttgaggattgcacatctgaaaagact
gttttgaaatatacgacagatgaaatgttgttgcatcaactctatcgtgaaccagatttg
ataagctatagcgtgttgatggtggatggtgccggtgagagaacactctcaactgatatc
ctacttggattattaaaggatattattcggtttagaaccaaacttaaggtaatcatctgc
accggaactactgatcatgttgaaaagctgagtggtttttttaataaagttcctattttc
aaaatcccaatacgaatgagtaatggtcacacaattgaatacataaaggcaccagtagca
gattacttggatgtagccatagacactgtacttcgaatccatgcaacagaaccaactggg
ggagatatcttggtcttcctcaccgatcatgaagagattgaaacagcagaagaagaactc
aagctaagagctggcttagccgaagagctgattatctgcccagtacatgaatacttacat
gttgagcttcaagcaaaagtttttaagcccacacctcaaggggccaggaaggttttcttt
tccacagtggctatcgatagggtaaaatacgtcattgacccagggttttgcaagaggaag
tgttataatccaagaactgggatggagttaatgcaagtcgctcgcatttcaaaggcaact
gcattgcaaaggatgctggtaagtgaaaggggaaatcgaatggcacctgccaagtgcttc
tgtttatatactgattgtacgtatgacaaagattttagtgaaatcacagtgccagaaatt
caatggactaaccttgcaaacgttgttcttaggcttctgcatctcggggttaatttatca
cagtttgagtttattgaccctccacctgctgaagcattaacaaaagcctcagaggtgtta
cttatactaggtgctacaaatactgaaggtgagcttacttgggttggtgtacagatggcg
gacatccctttgcatcatatgttgtccagggcgttagttgcttcaatcgagtacaaatgc
tcagctgaggtgatttctattgttgccatgctttcctccggtgatgcttcagtcttttgc
caaccacgggacaaagctgttgatgccgacaatgcacgattgcattttcaatctgagatc
gtgggggatcacattgcattgcttaaagtttacaatgcatgggaagagacaaattactca
acacagtggtgtcatgaaaactacatacgagttaggagcatgaggagagcaagatacgtt
cgggataagcttgaccagttgttggagaaggtcggaatcaagctcacctcaaatcgagat
aatttggagtctataaagaaggctattacctccggtttcttacctcattctgcaaagcag
caaatcaatagatcttatagaacagtcaaagagccagattcaccaagtatccgaatacat
cccaactcagggatggcacaagtgctcccgagatgggttgtgtatcatgatttggtgccc
acaaccggagaatatatgagacaggtaacagagatcaagccagaatggttggttgaatta
gctccacattattaccggctagaatatgcactggatgtggtttaa
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