Fragaria vesca (woodland strawberry): 101310031 Help Entry 101310031         CDS       T02666                                  Name (RefSeq) ATP-dependent RNA helicase DHX36   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism fve  Fragaria vesca (woodland strawberry) Pathway fve03018   RNA degradation Brite KEGG Orthology (KO) [BR:fve00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     101310031  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:fve03019]     101310031    03012 Translation factors [BR:fve03012]     101310031 Enzymes [BR:fve01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      101310031 Messenger RNA biogenesis [BR:fve03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      101310031 Translation factors [BR:fve03012]  Eukaryotic type   Initiation factors    Initiation associated factors     101310031 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_NTP_bind HA2_C Helicase_C dsrm DEAD HA2_N AAA_22 NACHT nSTAND3 ATPase AAA_19 Dicer_dimer ABC_tran NPHP3_N T2SSE AAA_11 PhoH Myosin_head Motif Other DBs NCBI-GeneID:  101310031 NCBI-ProteinID:  XP_004300947 LinkDB All DBs Position LG5:complement(3828792..3837394) Genome browser AA seq 1213 aa AA seqDB search MLSPQSPILLPPHLSSPSPHSQFPFCPSASALRPSPSPPSSLPLAMKDRPPPSPYGAVYV PPHHRLRSVITSPNYTSAASIASMKKTTAPASLSKARSNGTRAYYQTLPQEQLRKPELQR DSDGAGGVSDDVSDRDYNMSSNPVASVSDNIDEWKRKLTMLLRDDKKQELVSREKKDRRD FDDIAALASRMGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPLGLLRRVEAYLG DFLSQKSRTKETFPDVSFSRSSSSGSIGTDEGLFEQPEPVVSNNAVMEKVLWRRSLQLRE KEQAWQESREGRKVMELRRSLPAYKEKDALLTAISRNQVVIISGETGCGKTTQIPQFILE SEIEASRGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGKDTRLLF CTTGILLRRLLVDGSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATL DAELFSSYFGRAQIIHVPGFTYPVRTHFLEDVLESTGCRLTPYNQIDDYGQEKMWKMSKQ APRKRKSQIASVVEDALKAANFKGYSPQTRESLACWNPDCIGFNLIEYLLCNICENERPG AILVFMTGWDDINSLKEKLHANPLLGDPSRVLLLACHGSMASSEQRLIFDEPEDGVRKIV LATNIAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQP GECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVK NAIEYLKIIGALDENENLTILGRYLTMLPVEPKLGKMLLVGCIFNCLDPVLTVVSGLSVR DPFLTPFDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKVAERDFAGYDYCWKNFLSAQSM KAIDSLRKEFLSLLRDTDLIDANTATYNVWSYDVHLVRAVICYGLYPGICSVMHNEKSFS LKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSFS KGHIDGHLKMLGGYLEFFMKPAVAEMYQCIRTELDELIQTKLRNPRMAIHKYHELLSAVR LLLSEDQGEGRFVFGRQVHTSLKASVGVAQPGLVSRTESGPGGDNSKSQLQTLLTRAGYA PPTYKTKQLKNCKFQSSVEFNGMQIMGQPCNNKKSAEKDAAAEAIQWLVSGTQMGHEHIN HMSMMLKKSRKGP NT seq 3642 nt NT seq  +upstreamnt  +downstreamnt atgctctctccacagtctccgattcttcttcctcctcacctctcatctccttctccacat tcacaattccctttttgcccctccgcctctgccctgagaccctcaccgtcaccgccgtcg tctctcccgctcgccatgaaggaccggcctcctccttctccctacggcgccgtttacgtc cctccccaccaccgcctccgctccgtcatcacctcccctaattacacctccgccgcctca attgcctccatgaagaagactactgcccccgcttccctcagcaaggctcgctccaatggc actcgggcctactaccagacgctgccgcaggaacagctccgcaagccggagttgcagcgc gattctgacggcgccggcggcgtctccgatgatgtctccgatcgcgattataacatgtcg tcgaatccggttgcttcagtctctgataacattgatgagtggaaacggaagttaaccatg ctgttacgtgacgacaagaagcaagagttggtttcaagggagaaaaaagatagacgtgat tttgatgacatagccgctttggcaagcagaatgggactttacagccatctgtatgcaaag gttgctgtattcagtaaggtacccctgccaaactacagatttgatctcgatgaccggcga cctcaaagagaggtgagcttgcctcttgggttgctgaggagagttgaggcctaccttgga gacttcctttctcagaagtctagaactaaggaaacctttccagatgtttccttttctaga tcaagcagtagtggcagtattggtactgatgaagggctctttgagcaacctgaaccagtg gtatctaataatgctgtgatggaaaaagttctttggaggagaagcttgcagctgcgggaa aaggaacaagcttggcaggaatctcgtgaaggcagaaaagttatggaacttcgtagaagt ctcccagcttataaagagaaggatgctttgttgacagcaatttcacgaaatcaggttgtt atcatatcaggggaaacaggctgcggaaagaccacccaaattccacaattcattttagaa tctgagatagaagcttcccgtggagctgtttgtagtatcatatgtacacagcctaggcga atatctgctatgtctgtttctgaaagagttgcttctgagagaggggagaagctcggtgat tcagttggatataaggttcggttagagggtatgaaagggaaagacacacggcttctcttc tgtaccactggcattttgttgagaagattgctagtcgatggaagtttgaaaggtgtaact catgtcattgtggatgagattcatgaacgcggaatgaatgaagattttctgcttattgtt ctcaaggatctccttcctcgccggccagaactgaggttgattctgatgagtgcaacccta gatgctgagcttttctcatcctactttggcagggctcagataattcatgttccaggtttt acataccctgttcgaactcattttctggaagatgttctggaaagtacgggttgcaggcta actccatacaatcagattgatgattatggccaagaaaagatgtggaaaatgagtaaacag gcaccaagaaagaggaaaagtcaaattgcttctgttgttgaggatgcactcaaggcagct aactttaaaggttacagtccccagactcgggaatctctagcctgttggaatcctgattgt atcggttttaatctcatagagtatctcttatgcaatatctgtgagaatgaaaggcctggt gccattctagtctttatgactgggtgggatgacataaattctctgaaggaaaagttgcat gcaaatcctctcttaggtgatccaagccgagtcttgttgctagcatgccatggttccatg gccagttctgagcagaggttaatatttgatgagcctgaagatggagtcagaaaaatagtg ctggctactaatattgctgagacgagtatcacaattaatgatgttgtttttgttgttgat tgtggaaaagcaaaagagacttcatatgatgcactgaataatactccttgtttgcttcct tcctggatatcgaaggtttctgctcaacagagaagaggaagagctgggcgcgttcaacct ggggaatgttatcgtctctatcctagatgtgtgtatgatgcgtttgcagaatatcaattg ccggaaatcttgaggacacctctgcagtccctttgtctgcaaatcaaaagtttaaaattg ggaagtatttcagagttcttatctagggctctacagtcaccagagttacttgcggtgaaa aatgccatagagtatttaaagatcattggggccttggatgaaaacgagaatctgactatt ttaggacgctatctaactatgcttccagtggagccaaaacttggaaagatgctcttggta ggttgtatcttcaactgcctggatcctgttttgactgttgtttccggccttagtgtgaga gatcctttcttaacaccgtttgacaagaaagatcttgcagaggctgcaaaatctcagttt tcccgagaccacagtgatcaccttgcacttgtgcgtgcctatgagggctggaaagtagct gaaagagactttgctggatatgactactgctggaaaaattttctttcagcacaatcaatg aaagctattgattctctcaggaaagagttcttgtctttgctaagggatactgatcttatc gatgccaacacagctacctataatgtatggagctatgatgttcatcttgtccgtgcagtt atttgctatggcctgtatcctggaatttgctctgttatgcacaatgagaagtcattttca ctgaaaactatggaggatggtcaggtgctgctatactcgaactctgtcaatgctcgggaa tctaaaattccatatccctggctggttttcaatgagaagataaaggtgaactccgttttt ctacgggattcaacagctgtgtctgattcagtgctccttctatttggtggaagtttttca aaagggcatattgatggacacttgaaaatgttgggtggatacttagaatttttcatgaaa cctgctgtagcagaaatgtatcaatgtataaggacggaacttgatgagttaattcagacc aaactacggaacccaaggatggccatccacaaatatcatgaactcctttctgcagtgcgg ttgctgctctccgaggatcaaggtgagggtagatttgtatttggccgccaggtccataca tccttaaaagcatctgtgggggtagctcagccaggcttggtttcaagaactgaaagtgga cctgggggtgataattctaagagtcagctccagacattgctcacaagggcaggatatgct ccgccgacctacaaaactaagcaactaaagaactgtaaattccaatctagtgtggagttc aatggaatgcagattatggggcagccttgtaataacaagaagagtgcagaaaaagatgca gcagctgaggccattcagtggctggtgagtggtacacaaatgggccatgagcacatcaat cacatgtcaatgatgttgaagaaaagcagaaaaggaccataa

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