Fragaria vesca (woodland strawberry): 101310105
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Entry
101310105 CDS
T02666
Name
(RefSeq) putative ATP-dependent DNA helicase Q1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101310105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101310105
03400 DNA repair and recombination proteins [BR:
fve03400
]
101310105
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101310105
Messenger RNA biogenesis [BR:
fve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
101310105
DNA repair and recombination proteins [BR:
fve03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
101310105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
AAA_9
NPP
DUF1804
Motif
Other DBs
NCBI-GeneID:
101310105
NCBI-ProteinID:
XP_004296105
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All DBs
Position
LG3:22241331..22249108
Genome browser
AA seq
916 aa
AA seq
DB search
MQSTQAILKQYFGFSSFRPYQEEVIEKIIAGRDSLIVMATGSGKSLCYQVPPLVVGKTGV
VVSPLISLMQDQVMSLKQRGIRAEYMGSSQTDSTVQSRAESGQFDILYMTPEKACVIPVS
FWSKLLRAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGILVGVPFIGLTATATEKVRM
DIVNSLKLENPYVKIGSFDRGNLFYGVKLFNRTQSFVHDLVQEVSKFVRTDGSTIIYCTT
IKDVDQVFNSLKEVGIKAGIYHGQMDNKARAESHRLFIRDELDVMVATIAFGMGIDKPNI
RQVIHYGCPKSLESYYQESGRCGRDGMASVCWLYYTRSDFAKADFYAGECQTESQRRAVV
ESLMAAQQYCLSTTCRRKFLLGHFGEIFPSDRCGNCDNCISSKERDMSREAFLLMACIQS
CRGKWGLNMPVDILRGSRAKKILDAQYDKLPLHGLGKDYSANWWKALAYQLISSGYLMEM
VSDIYRTVSVSRKGEQFLSSAGPDHQPPLVLPVTSEMVDDEDNKSTSGEVGEIKGLSTLE
CEGFSEAEKQLYHSLLEERRKLARSLGTAPYAICGDQAIKKIALTRPSTRARLANIDGVN
QHLVVAHGNHFLQIIRHLSQGLNLSLDGEAPVETAVTKKVYPVPNHHQRKLTPAKFEAWR
MWHEDGLSIQKIANFPGRAAPIKEQTVQEYLMEAAQEGFAIDWVRLRNEVGLTQKIMSDI
QCAISKVGSREKLKPIKDELPEDVSYAHIKTFLTMEKCGISLDGTPPNYHNAGKADQLVN
KETEMSPSSIHTSPMEEPHEVKTSGRDSDAYSLDKNTEAASLPFNGEQGLKLPEVHFEDL
LSKKRQKLGSPKEESKTTLKATEKSILDWLNTKKGVTLSEILEHFNGSEKESVIELLTSL
ESEFEIYRKNNMYLVL
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctacgcaggccattctcaagcaatattttgggttctcttcatttcggccatac
caggaggaagtgattgagaaaatcatagctggaagggactctttgattgtcatggccact
ggaagtggcaagtctttgtgttatcaagtgcctcctttggttgttgggaagactggtgtg
gttgtcagccctcttatatccttaatgcaagatcaggtgatgtctttgaaacaaagaggg
atcagagctgaatatatgggtagtagtcaaactgatagcactgtccagagccgagccgag
agtggtcagtttgatatcttgtacatgacccctgaaaaggcatgtgtgattcctgtcagc
ttctggtcaaaattactaagggctgggatctgcttgtttgctgttgatgaagcacactgc
atatcagaatggggccatgatttcagggtagaatacaagcaattggacaaattacgtggc
attcttgttggtgtgccgtttattggcttaaccgcaactgctactgaaaaggttcgaatg
gacattgttaattccttgaagttggaaaacccatatgtcaaaataggctcatttgatcgt
ggaaatctgttctatggtgtcaagttattcaatcggactcaatcatttgttcatgacctg
gttcaagaagtttccaaatttgtacgcacagatggttcaactataatttactgcacgaca
attaaagacgttgatcaggtattcaattccctgaaggaggtgggcattaaggctggaatc
taccatggtcaaatggataataaagctcgtgcagaatcccatagattattcataagagat
gaacttgatgtcatggttgctactattgcttttggcatgggtattgataagccaaacata
agacaagtaatccactatggctgcccaaagagtttggaatcttattaccaggaaagtgga
cgatgtggtagagatggtatggcttctgtctgctggctctattacacaagaagcgacttc
gctaaagctgacttttatgctggagagtgtcaaacagaaagtcaacgaagagctgttgta
gagtcattgatggcagcacaacaatattgcttatcaacaacttgcagaaggaagttcttg
cttggtcactttggggaaatctttccatctgatagatgtggtaattgtgataattgtatt
tcctcaaaggagagggacatgtctagagaagcatttcttctaatggcttgcattcaatca
tgtcggggtaaatggggtctgaatatgcctgtagatattcttcgtggctctagggccaaa
aagattcttgatgcccaatatgacaagcttccgctgcatggacttgggaaagactattca
gcaaattggtggaaagcactcgcttaccaattaatctcttctggttatttgatggagatg
gtatctgatatatacagaactgtaagcgtcagtcggaaaggggagcaatttctaagttct
gctggacctgatcatcaaccgcctctggtgttgccagtgaccagtgaaatggtagatgat
gaggacaataaaagtacatcaggtgaagtcggagaaattaaaggtttgtctactttggaa
tgcgaaggattttcagaggctgagaagcaactgtatcattcacttcttgaagagagaagg
aagcttgcaagaagcctaggaactgcaccatatgccatttgtggtgatcaagccatcaaa
aaaattgctttaacaagaccatcaaccagagcaaggttagctaacatcgatggcgttaac
cagcaccttgtagtggcacacggtaatcattttctccagatcattcggcatctatcacaa
ggactaaatctttcgttggatggagaggcacctgtagaaactgctgttacgaaaaaagta
tatccagtacctaaccaccatcagagaaagttaacaccggcaaagtttgaagcttggaga
atgtggcatgaagatggcctctcaattcagaaaattgctaatttccctggtagagctgct
cctattaaagagcagactgttcaagaatatctgatggaagctgctcaagaaggatttgca
attgattgggtcagattacgcaatgaggttggactaacacaaaaaattatgtcagatatt
cagtgtgccatttcaaaggttggctctagagaaaagttaaagcctatcaaagacgaatta
ccagaagatgtaagttatgcacacatcaagactttcttgacaatggaaaagtgtgggatc
tcgctggatgggactccacctaattaccacaatgcaggaaaagccgatcaacttgtcaac
aaggaaactgaaatgtcaccgagttctattcatacatcccccatggaagaacctcatgaa
gtgaaaacctcaggccgagattcagatgcttacagtttggataaaaatacagaagcagct
tcccttcccttcaatggagaacaaggtttaaagctacctgaagtacattttgaggacttg
ctctcaaagaaacgtcaaaagcttggtagtcccaaggaggaaagtaaaactacactgaag
gcaaccgagaaatccatattggactggcttaataccaaaaaaggagttactctctccgag
attttggagcacttcaatggatctgaaaaagaatctgtcattgaactcctcactagcctt
gaaagtgaatttgagatatacagaaagaacaatatgtatttggttctgtaa
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