Fragaria vesca (woodland strawberry): 101310119
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Entry
101310119 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101310119
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101310119
Spliceosome [BR:
fve03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101310119
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
IstB_IS21
AAA_19
Motif
Other DBs
NCBI-GeneID:
101310119
NCBI-ProteinID:
XP_004298595
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All DBs
Position
LG4:22123961..22128438
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AA seq
1176 aa
AA seq
DB search
MDTLSILSPSPTFFFTRLLSLKPSPPPFLHHLTQTLAFSSPKPPPPPLPPNLLRFRVTFQ
SPSSAFAAKSQLSDADDDEEEDEFEEEDDDEEDVAADEYDDISGEISDDGLEQSDDEIDM
ESSPAIRSEEFRWQRVEKLCEDVKQFGEEMIDDGALASIYDFRIDKFQRLAIQAFLRGSS
VVVSAPTSSGKTLIAEAAAVATVAKGRRLFYTTPLKALSNQKFREFRETFGEDNVGLLTG
DSAINKEAQVLIMTTEILRNMLYQSVGMASARDSLFHVDVIVLDEVHYLSDISRGTVWEE
IVIYSPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSTKRPVPLTWHFSMKTSLLPL
LDKSGKHMNRRLSVNYLQLSAPAPKSNKDDGSRRRNSRRRTSETSYDDSTGNMSRRPLSK
NDINLIYRSQVPQVTDTLWHLKARDMLPAVWFIFSRKGCDAAVQYVQDCNLLDDCEASEV
ELALKRFRLKYPDAIRESSVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETL
AAGINMPARTAIIASLSKRSDSGRTLLSSNELLQMAGRAGRRGTDDRGHVVLIQNPYEGA
EAGCKILFAGLEPLVSQFTASYGMVLNLLAGSKVTRRSNESDETKASQSGRTLDEARKLV
EQSFGNYVGSNVMLAAKEEIARIEKEIEMLTLEISDDAIDRKSRKLLSGPAYKEIANLQE
ELRAEKRLRTELRKRMESQKLSSLRPLLEECENGQLPFLCLQYKDSEGVQHSIPAVYLGK
VESLSGSKLKNMVSVDDSFALTPVAVESEPTSVFEPSYYAALGSDNSWYLFTEKWIKTIY
KTGFPNVALALGDALPREIMSMLLDRTEMKWEKLAESDLGGFWGMEGSLETWSWSLNVPV
LNSLSEHDELLHKSQAYNHAVERYKEQRSKVSRLKKKISRTQGFREYKKIVDMASFTEEK
IKRLKGRARRLTNRIEQIEPSGWKEFLQISNVIHETRALDINTHTIFPLGETAAAIRGEN
ELWLAMVLRNKILLSLKPTELAAVCASLVSEGIKIRPWKNNSYIYEPSSTVVDVVSFLDE
QRSSFLQLQEKHGVNIPCYLDTQFAGMVEAWVSGLTWREIMMDCAMDEGDLARLLRRTID
LLVQIPKLPDIDPVLQSNAKTASNIMDRPPISELAG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggacacactctctatcctctcaccctctcccaccttcttcttcacgcgcctcctctct
ctcaaaccctcacctcctccctttcttcaccacctcacccaaaccctagccttctcctcc
cccaagccaccaccgccacctcttccccctaatctactccgattccgagtcactttccag
tcccctagctccgccttcgccgcgaaatctcagctctccgacgccgacgacgatgaggag
gaagacgagttcgaggaggaggacgacgacgaagaagacgtcgcggccgacgagtacgac
gacatttccggcgaaatctccgacgacggcctcgaacaaagcgacgatgaaattgacatg
gagtcgtctccggcgattcgaagcgaggaattcaggtggcagagagtggagaagctctgc
gaggacgtcaagcagttcggcgaggaaatgatcgacgacggcgcgcttgcttctatctac
gatttccgaatcgataagtttcagagattagctatacaagcattcttgagaggctcatca
gtagttgtgtcagcgccgacgagtagcggaaagactttgatagcggaagctgctgctgta
gctactgtagctaaaggaaggagattgttctacacaactccgcttaaggccttgtcgaat
cagaagtttcgcgaatttcgtgaaacttttggtgaggacaatgttggccttctcacgggg
gattcggcaataaacaaagaggctcaggttctgatcatgaccacagagattttgcgcaac
atgttgtatcagagtgttggaatggcttctgcgcgggactcactatttcacgtggatgta
atagtcttggatgaagttcattatctaagtgacatatctcgcggtacagtgtgggaagaa
attgttatttattccccaaaagaggttcaactcatatgtttgtccgcaacagttgctaat
ccagatgaattggctggttggattggtcagattcatggtaaaactgaattggtaacttca
acaaagcgtccagtaccactgacttggcatttctcgatgaagacttctttattaccactt
cttgataaatctggaaaacacatgaataggaggttgtcagtcaattatctgcaactcagt
gctcctgcaccaaaatctaataaagatgatggatcgagaaggaggaattcaagaagacgg
actagtgagactagctatgatgacagtactggtaacatgtctagacgaccactttcaaag
aatgacatcaacttaatataccgttcacaagtgcctcaagttactgatacattatggcac
cttaaggctagggatatgctaccagcagtatggtttatttttagcaggaaaggttgtgat
gccgccgttcagtatgttcaagattgcaaccttttggatgactgtgaagcaagtgaggtt
gaattagcgttgaagaggttccgcctaaagtatccggatgctatcagggagagttcagta
aaggggttactgcgaggggttgctgcccatcatgcgggctgtctacctttatggaaatca
ttcatagaagagctgtttcagcgtggtcttgttaaggttgtatttgctacagaaacactt
gctgcgggaatcaatatgcctgctagaacagccattattgcatccctcagcaaaaggagt
gacagtggacgtaccctattgagctcaaatgaactacttcaaatggctgggcgtgctgga
cgtagaggcacggatgacaggggtcatgtagtgcttattcaaaatccttacgagggtgct
gaagctggttgcaagattctttttgccggacttgaacctttggtatcacagtttactgct
tcatatggaatggtgctaaatcttcttgccggttcaaaagttactcgtaggtcaaatgaa
tcagatgaaacaaaagcctcccaatctgggcgaactttggacgaagctagaaagctagtt
gaacaaagttttggaaactatgttgggagcaatgttatgcttgctgcaaaagaggagatt
gctagaatcgagaaagaaatagagatgctgactttggaaattagtgatgatgccattgac
agaaaaagcaggaagctcttgtctggaccagcatacaaggagattgcgaatctacaggaa
gaattaagggcagagaaacgcctaaggactgaacttcgaaaaagaatggaatctcagaag
ctttcttcactacggcccttattagaggaatgcgaaaatgggcagttaccctttttgtgc
ttgcagtataaagattcagaaggagttcaacactctatcccagctgtttatttggggaag
gttgagtcactaagtggctcaaaacttaagaacatggtttctgtggatgactcttttgca
ctaaccccagtagcagtagagtctgaaccaacttcagtttttgaaccatcgtattatgcc
gctcttggctcagataactcttggtacctatttacagaaaagtggatcaaaacaatttat
aagacaggctttccaaatgttgccttagctctaggagatgctttgcctcgggaaataatg
agcatgcttcttgatagaaccgaaatgaagtgggagaagcttgccgagtctgatcttggt
ggtttttggggcatggaaggatctcttgagacgtggtcttggagtttgaatgtacctgtc
ttgaatagtctttctgaacatgatgagcttttacacaagtcacaagcatataatcatgct
gtagagcgttacaaagaacaaagaagtaaagtttcacgtctgaagaaaaagatatcacgc
acacaaggcttcagagaatacaagaagatcgtagacatggccagctttactgaggagaag
attaagcgcttgaagggtagagcaagacgtctgactaatcgaatagagcagattgaacca
tctggctggaaagagttcttgcagatcagcaatgtcatacacgaaactcgggcattagat
attaacactcataccatatttccacttggtgaaactgcagctgccatccgaggagagaat
gaactgtggcttgccatggttcttcgaaataagatcttattaagtttaaagcctacagaa
cttgctgccgtgtgcgcaagtttagtatctgaagggatcaaaattcgaccttggaaaaat
aacagctacatatatgaaccttcaagcacagtagtcgacgtggtgagcttcttggacgag
caaagaagcagtttcttacagctccaagaaaagcatggggtaaatataccatgctatttg
gatacccagtttgcaggcatggttgaagcctgggtttctgggttgacatggagggagatc
atgatggattgtgcaatggacgagggcgatttagcccgccttctgcggcgaactattgat
ctgcttgtgcaaattcccaagttgcctgatatagaccccgtcttgcagagcaatgcaaag
acggcgtcgaatatcatggaccgccctccgattagtgagttggctggttga
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