Fragaria vesca (woodland strawberry): 101310413
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Entry
101310413 CDS
T02666
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101310413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101310413
03009 Ribosome biogenesis [BR:
fve03009
]
101310413
04131 Membrane trafficking [BR:
fve04131
]
101310413
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fve04147
]
101310413
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
101310413
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
101310413
Membrane trafficking [BR:
fve04131
]
SNARE
SNARE associated proteins
Others
101310413
Autophagy
Aggrephagy
Other aggrephagy associated proteins
101310413
Exosome [BR:
fve04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
101310413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
ATPase_2
AAA_28
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
AAA_7
Vps4_C
Viral_helicase1
NACHT
NB-ARC
AAA_lid_PRS2_C
TsaE
AAA_24
Zeta_toxin
DUF815
ResIII
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
101310413
NCBI-ProteinID:
XP_004298972
LinkDB
All DBs
Position
LG5:3342070..3346102
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AA seq
814 aa
AA seq
DB search
MADPSSSGANSAQPSSTDPKAKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATME
KLQFFRGDTVLIKGKKRKDTVCIVLADEQCDEPRIRMNKVVRANLRVRLGDVVSVHTCPD
VKYGKRVHILPIDDTIEGVSGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVID
TDPGEYCVVAPDTEIFCEGEPVKREDEEKLNEVGYDDVGGVRKQMAQIRELVELPLRHPQ
LFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK
AFEEAEKNAPSIIFIDELDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMAATN
RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVG
ADLAALCTEAALQCIREKMDVIDLEDEEIDAEVLNSMAVTNEHFQTALGASNPSALRETV
VEVPNVSWDAIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLA
KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGG
SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP
DEASRLQIFKACLRKSPVNRDVDLAVLARHTHGFSGADITEICQRACKYAIRENIEKDIE
KERRKAENPEAMEEDDIDEVPEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGI
GSDFRFPQTGNTAGAAADPFASASAAADDDDLYS
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccgagctcgtccggcgctaattcggcccagccctcttctactgacccgaaa
gctaagaaggatttttccacggcgattttggagcggaagaagtctcctaatcggcttgta
gttgatgaagctatcaatgatgataattctgtggtgtccttgcaccctgctaccatggaa
aaacttcagtttttccggggagacactgtgctaataaaggggaagaaacggaaagataca
gtttgtattgttcttgctgatgaacaatgtgacgaaccaaggatcagaatgaacaaagtt
gtaagggctaatcttagggtgcgtcttggagatgttgtgtcagttcacacttgtccggat
gtcaagtatgggaagcgggttcacatccttccaattgatgatacaattgaaggcgtatct
ggaaacttgtttgatgcatatttgaagccatacttcttggaatcttaccggcctgtgagg
aagggtgaccttttcctggtcaggggtgggatgcgaagtgttgagttcaaggtcattgac
acagaccctggtgaatactgtgttgttgctcccgatactgagattttctgtgagggagaa
cctgtgaagcgtgaggatgaggaaaaattgaatgaggtgggttatgatgatgttggaggt
gttaggaaacaaatggctcagatacgtgaattagtagagttacctcttagacacccacag
cttttcaagtccattggagtgaaaccaccaaaaggtattctgctttatggaccaccgggg
tctgggaaaactctgattgcaagggctgtagctaatgaaactggagcattcttctttttg
attaatgggcctgaaataatgtcaaagttagctggtgagagtgaaagcaatctgaggaag
gcatttgaagaagctgaaaagaatgccccatcaatcatttttattgatgagttagattcc
attgctccaaagagggagaagactcagggtgaagtggaaaggcgtatcgtttcgcaactt
ctgactttgatggatggcctcaagtcccgtgcacatgtcattgtcatggcagcaacaaat
aggccaaacagcattgacccggctctgaggaggtttggaagatttgatagagagattgac
attggtgtaccagatgaaattggaagattggaagttttgagaatccatacaaagaacatg
aaacttgcagaagatgttgatctcgaacgagtttcaaaggacacccatggttatgtcggc
gctgatcttgccgcactctgtactgaggctgcacttcagtgtatccgtgagaaaatggat
gttattgacttagaagatgaggaaattgatgccgaggtgctgaattctatggctgtgacc
aatgaacacttccagactgcattgggtgcttcaaatccttcagcattgcgtgaaactgtt
gtggaggtacctaatgtctcatgggatgcaattggaggattggataatgtcaaaagagaa
cttcaagagactgttcaatacccagtggagcatccagagaagtttgagaaatttggcatg
tcaccttctaaaggtgttctcttttatgggccaccaggctgtggtaaaactcttcttgca
aaggcaattgccaatgaatgccaggctaatttcattagtatcaaaggccctgagttgcta
acaatgtggtttggagaaagtgaggcaaatgtccgtgagatatttgacaaagctcgccaa
tctgctccttgtgttcttttctttgatgagctggactcaattgcaactcagcgtggaggt
tctgtaggagatgctggtggtgcagcagatagagtcttgaaccaacttctaactgaaatg
gatggaatgagtgctaagaaaacagtttttatcattggagcaacaaataggccagacatt
attgacccagcattgctcaggcctggacggcttgaccagctcatctatatcccactccca
gatgaagcttcccgtcttcagattttcaaagcatgtttgaggaagtcacccgtcaatagg
gatgttgaccttgcagttcttgcacgtcatacccacggtttcagtggtgctgatatcact
gagatatgccagcgtgcctgcaaatatgccatcagagaaaatattgagaaggatattgaa
aaggagagaagaaaggcggagaatccagaagcaatggaggaggatgacattgatgaggtt
ccagaaataaagccagcacactttgaggagtctatgaaatttgcccgcagaagtgttagt
gatgcagacatcaggaagtaccaggcattcgctcagactctgcaacaatctcgtgggatt
gggtctgatttccggttcccccaaacaggcaacactgcaggagcagctgcagaccccttt
gcttcagcttcagctgctgcagacgacgatgatctgtacagctga
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