KEGG   Fragaria vesca (woodland strawberry): 101310413
Entry
101310413         CDS       T02666                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    101310413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101310413
   03009 Ribosome biogenesis [BR:fve03009]
    101310413
   04131 Membrane trafficking [BR:fve04131]
    101310413
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fve04147]
    101310413
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     101310413
Ribosome biogenesis [BR:fve03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    101310413
Membrane trafficking [BR:fve04131]
 SNARE
  SNARE associated proteins
   Others
    101310413
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    101310413
Exosome [BR:fve04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   101310413
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_33 AAA_2 AAA_5 AAA_22 TIP49 AAA_14 NPHP3_N RNA_helicase AAA_17 nSTAND3 Mg_chelatase ATPase_2 AAA_28 AAA_18 Parvo_NS1 IstB_IS21 ABC_tran AAA_7 Vps4_C Viral_helicase1 NACHT NB-ARC AAA_lid_PRS2_C TsaE AAA_24 Zeta_toxin DUF815 ResIII KAP_NTPase Zot
Other DBs
NCBI-GeneID: 101310413
NCBI-ProteinID: XP_004298972
LinkDB
Position
LG5:3342070..3346102
AA seq 814 aa
MADPSSSGANSAQPSSTDPKAKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATME
KLQFFRGDTVLIKGKKRKDTVCIVLADEQCDEPRIRMNKVVRANLRVRLGDVVSVHTCPD
VKYGKRVHILPIDDTIEGVSGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVID
TDPGEYCVVAPDTEIFCEGEPVKREDEEKLNEVGYDDVGGVRKQMAQIRELVELPLRHPQ
LFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK
AFEEAEKNAPSIIFIDELDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMAATN
RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVG
ADLAALCTEAALQCIREKMDVIDLEDEEIDAEVLNSMAVTNEHFQTALGASNPSALRETV
VEVPNVSWDAIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLA
KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGG
SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP
DEASRLQIFKACLRKSPVNRDVDLAVLARHTHGFSGADITEICQRACKYAIRENIEKDIE
KERRKAENPEAMEEDDIDEVPEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGI
GSDFRFPQTGNTAGAAADPFASASAAADDDDLYS
NT seq 2445 nt   +upstreamnt  +downstreamnt
atggcggatccgagctcgtccggcgctaattcggcccagccctcttctactgacccgaaa
gctaagaaggatttttccacggcgattttggagcggaagaagtctcctaatcggcttgta
gttgatgaagctatcaatgatgataattctgtggtgtccttgcaccctgctaccatggaa
aaacttcagtttttccggggagacactgtgctaataaaggggaagaaacggaaagataca
gtttgtattgttcttgctgatgaacaatgtgacgaaccaaggatcagaatgaacaaagtt
gtaagggctaatcttagggtgcgtcttggagatgttgtgtcagttcacacttgtccggat
gtcaagtatgggaagcgggttcacatccttccaattgatgatacaattgaaggcgtatct
ggaaacttgtttgatgcatatttgaagccatacttcttggaatcttaccggcctgtgagg
aagggtgaccttttcctggtcaggggtgggatgcgaagtgttgagttcaaggtcattgac
acagaccctggtgaatactgtgttgttgctcccgatactgagattttctgtgagggagaa
cctgtgaagcgtgaggatgaggaaaaattgaatgaggtgggttatgatgatgttggaggt
gttaggaaacaaatggctcagatacgtgaattagtagagttacctcttagacacccacag
cttttcaagtccattggagtgaaaccaccaaaaggtattctgctttatggaccaccgggg
tctgggaaaactctgattgcaagggctgtagctaatgaaactggagcattcttctttttg
attaatgggcctgaaataatgtcaaagttagctggtgagagtgaaagcaatctgaggaag
gcatttgaagaagctgaaaagaatgccccatcaatcatttttattgatgagttagattcc
attgctccaaagagggagaagactcagggtgaagtggaaaggcgtatcgtttcgcaactt
ctgactttgatggatggcctcaagtcccgtgcacatgtcattgtcatggcagcaacaaat
aggccaaacagcattgacccggctctgaggaggtttggaagatttgatagagagattgac
attggtgtaccagatgaaattggaagattggaagttttgagaatccatacaaagaacatg
aaacttgcagaagatgttgatctcgaacgagtttcaaaggacacccatggttatgtcggc
gctgatcttgccgcactctgtactgaggctgcacttcagtgtatccgtgagaaaatggat
gttattgacttagaagatgaggaaattgatgccgaggtgctgaattctatggctgtgacc
aatgaacacttccagactgcattgggtgcttcaaatccttcagcattgcgtgaaactgtt
gtggaggtacctaatgtctcatgggatgcaattggaggattggataatgtcaaaagagaa
cttcaagagactgttcaatacccagtggagcatccagagaagtttgagaaatttggcatg
tcaccttctaaaggtgttctcttttatgggccaccaggctgtggtaaaactcttcttgca
aaggcaattgccaatgaatgccaggctaatttcattagtatcaaaggccctgagttgcta
acaatgtggtttggagaaagtgaggcaaatgtccgtgagatatttgacaaagctcgccaa
tctgctccttgtgttcttttctttgatgagctggactcaattgcaactcagcgtggaggt
tctgtaggagatgctggtggtgcagcagatagagtcttgaaccaacttctaactgaaatg
gatggaatgagtgctaagaaaacagtttttatcattggagcaacaaataggccagacatt
attgacccagcattgctcaggcctggacggcttgaccagctcatctatatcccactccca
gatgaagcttcccgtcttcagattttcaaagcatgtttgaggaagtcacccgtcaatagg
gatgttgaccttgcagttcttgcacgtcatacccacggtttcagtggtgctgatatcact
gagatatgccagcgtgcctgcaaatatgccatcagagaaaatattgagaaggatattgaa
aaggagagaagaaaggcggagaatccagaagcaatggaggaggatgacattgatgaggtt
ccagaaataaagccagcacactttgaggagtctatgaaatttgcccgcagaagtgttagt
gatgcagacatcaggaagtaccaggcattcgctcagactctgcaacaatctcgtgggatt
gggtctgatttccggttcccccaaacaggcaacactgcaggagcagctgcagaccccttt
gcttcagcttcagctgctgcagacgacgatgatctgtacagctga

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