Fragaria vesca (woodland strawberry): 101310957
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Entry
101310957 CDS
T02666
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
fve03015
mRNA surveillance pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101310957
09122 Translation
03013 Nucleocytoplasmic transport
101310957
03015 mRNA surveillance pathway
101310957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101310957
03041 Spliceosome [BR:
fve03041
]
101310957
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
101310957
Spliceosome [BR:
fve03041
]
Common components
Common spliceosomal components
Cap binding complex
101310957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
101310957
NCBI-ProteinID:
XP_004291754
LinkDB
All DBs
Position
LG2:30874825..30887310
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AA seq
864 aa
AA seq
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MSVWKGLLLRIGEASPDYGTSSDFKEHIETCFGVLRRELEHSAHDVLQFLVQCAEQLPHK
IPLYSTVIGLLNLENEDFIRKVVEKTHNNFQDALDTGNCNKIRILMRFLTAMMCSKVLHP
SSLVIVFETLLSSAATTVDEDKGNPSWQSRADFYITCILSCLPWGGAELIEQVPGEIERV
MVGVEAYLSIRKHVSDTGLSFFEDDDDSAKVSADKDFLEDLWGRIQVLSSNGWKLDSVPR
PHLSFEAQLVNGKSHEFGPISCPDQPELPSAVSNITYGKQKHDAESIYPQRIRRLNIFPS
NKTEDMEPMDRFIVEEYLLDVLFFLNGCRKECASYMAGLPVPFRYEYLMAETIFSQLLLL
PQPPFRPTYYTLVIMDLCKALPGAFPGVVAGAVRALFEKIADLDMECRTRLILWFSHHLS
NFQFIWPWEEWSYVLDLSKWAPQRVFVQEVLEREVRLSYWEKVKQSIESAPGLEQLLPPK
GTPNFKFSVEESMEGNEQHALSAELRNLVKGRASAREVILWIEESLFPVHGMEVTLSVVA
QTLLDIGSKSFTHLITVLERYGQVIAKLCADQDKQVMLITEIDSYWKNNAQMTALAIDRM
MGYRLLSNLAIVRWVFSPENVEQFHLSDRSWEILRNAVGKTYNRVCDLRKEILSMKKNIV
SAEEAAATAKAELVAAESKLSLVDGEPVLGENPMRLKRLKSYAEKAKEEEVSVRESLEAK
EALLARALDEFEALFISLYKNFLNVFMERLPEASKVATLQGLKSSHADSMSVDLEESSAM
EVDNENGKSKSQLNGAGTSNTYNVGENEQWCLSTLGYLKAFSRQYASEIWPHMEKLDAEV
ITENVHPLIRKAIYCGLRRSTDGL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtttggaagggccttcttcttcgaattggtgaagcttccccagactatggcacc
tcctccgacttcaaagaacacattgagacttgcttcggcgtcctccgccgagaattagaa
cactccgcccacgacgttttgcagttccttgtccagtgtgctgaacagttgcctcacaag
attcccctatacagtaccgtgattggcttgttaaacttggagaatgaggattttatcagg
aaagttgtggagaagacgcacaataattttcaggatgccttggatactggaaattgcaac
aagattcgtattttgatgaggttcctgactgctatgatgtgcagtaaagttctccatccc
agttctcttgtgattgtctttgaaacattattatcatcagccgcaacaacagttgatgag
gataaaggaaatccatcctggcaatcacgagctgacttttacataacatgcattttatcc
tgtctcccttggggaggagcagaactgattgagcaagtcccgggggaaattgaaagagtt
atggttggtgtagaagcttatttgagcataagaaagcatgttagtgacactgggttgtct
ttttttgaggatgatgatgacagtgcaaaagtctctgctgataaggattttttggaagat
ttgtggggccgaatacaagttctatcaagtaatggatggaaacttgacagtgttccaaga
cctcacttgtcatttgaagcacaactagtcaatggaaagtctcatgagtttggccccatc
agctgtcctgaccaacctgaactaccttcagcagtttccaatattacttatggtaaacaa
aagcatgatgcagagtcaatttatcctcaacggatccgaaggctgaatatatttccttca
aataaaactgaggatatggaacccatggatcgcttcattgtggaagagtatctactagat
gttctttttttcttaaatggctgtcgaaaggaatgtgcttcatacatggctggcctacct
gtaccctttagatatgagtatcttatggcggagacaattttctctcagttacttctgcta
ccacaaccccctttcaggccaacatattacactctggttattatggacctctgtaaggct
cttcctggagcctttccgggagtggttgctggtgctgtaagggctcttttcgagaaaata
gctgatcttgatatggaatgtcgaacacggctaatcctttggttttctcaccacttatcc
aactttcagttcatctggccttgggaggagtggtcttatgtcttggacctgtcaaagtgg
gcgccacaacgtgtatttgttcaggaggtcctggagagagaagttcgtttgtcctactgg
gaaaaagtgaagcagagtattgagagtgctcctggtctagaacagttgcttcctccaaaa
gggacaccaaacttcaagttcagtgttgaagaaagcatggaaggaaatgaacaacatgca
ctttctgctgaactcagaaacctggtaaaaggaagggcatctgcccgtgaagtaatctta
tggatagaggaaagtctgtttcctgtccatggtatggaagttaccctctctgtggttgcg
caaactctcctcgacattggatctaaaagtttcactcatttgattactgtattggagaga
tacggccaagtcattgcaaaactatgtgctgaccaggataagcaggtcatgttgatcacc
gagattgattcttactggaagaacaatgctcaaatgaccgctcttgcaatagataggatg
atggggtaccgacttctatctaatttggccattgtcagatgggtattttctcctgaaaat
gttgagcaatttcatttatcagaccgctcatgggagatattaagaaatgcagttggcaag
acatacaaccgtgtatgtgatctgaggaaagagattttgtccatgaagaagaatatcgta
tcggctgaagaagctgcagcaactgcaaaagcagagttagtggccgctgaatcaaagctc
tcacttgtagatggagaacctgttcttggtgaaaacccgatgaggttgaagcgtttgaaa
tcctatgctgagaaggcaaaggaggaggaggtgtccgtacgtgaatctttagaggctaag
gaagctctgcttgcccgagcccttgatgaatttgaggcattattcatctctttgtacaaa
aacttcctgaatgtcttcatggaaaggctgccagaggcatcaaaagttgctacattgcag
ggattaaaatctagtcatgcagattctatgtcagtcgacctcgaagaatcatctgcaatg
gaggtggacaatgagaatggaaaatctaaaagtcaattgaatggtgccgggacaagtaat
acatataatgttggagaaaatgagcagtggtgtctgtcaacattaggctacctcaaagcc
ttctcaaggcaatatgcttctgagatatggcctcacatggagaagttggatgcagaggtt
ataacagagaatgtgcacccccttatacgaaaagcaatttattgtggtctccgtcgatca
actgatgggctgtaa
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