Fragaria vesca (woodland strawberry): 101311822
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Entry
101311822 CDS
T02666
Name
(RefSeq) E3 ubiquitin-protein ligase RING1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101311822
04121 Ubiquitin system [BR:
fve04121
]
101311822
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101311822
Membrane trafficking [BR:
fve04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
101311822
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101311822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
Zn_ribbon_19
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
CxC4
zf-Nse
Rad50_zn_hook
Prok-RING_1
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
101311822
NCBI-ProteinID:
XP_004291377
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Position
LG2:complement(23409296..23411340)
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AA seq
308 aa
AA seq
DB search
MSSGRNTHWCYRCRRPTRLQGRDAVCQNCSGGFVQELDDMVHISPLDFFGSDNDEDRDRR
FGFMEAFSAWQQLTDRRSSDIIRGRSDFVPEHAPGFSPLLIFGGQIPFRLSGNGAFEALF
NGSPGIGVTRGNVGDYFVGPGLEELFEQLSANDRRGPPPASRISIDAMPTIKITNKHLRS
DSHCPVCQDKFELGSEARQMPCKHVYHSDCIVPWLVQHNSCPVCRQELHQQGSESGRSSN
SRSRSSGNTSGRESGRESQGRRNPFASLWPFRASSSSSSSNRNPPHESSPPTARENSNQM
GYSGWPFD
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcggtagaaacacccattggtgctacagatgcaggcggccaacaaggctgcaa
gggcgagatgcagtttgccaaaactgcagtggaggatttgttcaagaacttgatgacatg
gttcatatcagcccactagatttctttggatccgacaatgatgaggaccgtgatagaagg
tttgggttcatggaagcattctcagcttggcagcagttgacagacagaagaagtagtgat
attataagaggtagatcagatttcgttcctgaacatgccccggggttttctccattgttg
atttttggtggccaaattcctttccgcttgtctggcaatggtgcatttgaagctctgttc
aatggatctcctggaataggtgttacacggggtaatgtgggtgattattttgttggtcct
ggcttggaagaattgtttgagcagctttcagcaaatgataggaggggccctccccctgca
tcaaggatttcaattgatgcaatgccaactattaagatcacaaataagcatcttcgttcc
gattcgcattgccctgtttgtcaagacaaatttgagctgggatctgaagcaaggcaaatg
ccatgtaaacatgtatatcactcagattgtattgtaccatggctagtccagcacaactca
tgccctgtttgccgccaagaactacatcagcaaggttctgaaagtggtcgtagctcaaac
agtagaagtagaagcagtggtaataccagtggaagggagagtggtagggaaagccaagga
agacgaaatccttttgcttctctgtggccatttcgcgcatctagttctagctctagttct
aaccgtaacccaccacatgaaagcagcccaccaactgctcgtgaaaatagcaatcaaatg
ggttattcaggatggccatttgactga
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