Fragaria vesca (woodland strawberry): 101311935
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Entry
101311935 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
fve03015
mRNA surveillance pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101311935
09122 Translation
03013 Nucleocytoplasmic transport
101311935
03015 mRNA surveillance pathway
101311935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101311935
03041 Spliceosome [BR:
fve03041
]
101311935
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101311935
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101311935
Spliceosome [BR:
fve03041
]
Complex C
Other components
EJC/TREX
101311935
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101311935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
101311935
NCBI-ProteinID:
XP_011459186
LinkDB
All DBs
Position
LG2:24122115..24126962
Genome browser
AA seq
426 aa
AA seq
DB search
MGETREDVYDEELVDYEEDDEKAPDSAAKVNGESAKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALILC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVTIKNHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaaccagggaggatgtctacgacgaggagctcgtcgattacgaggaggacgac
gagaaggcccctgactccgcggccaaagtcaatggcgaatccgccaagaagggatatgtt
ggaattcacagctcaggattcagagatttcctactaaagccggagcttctacgtgctatc
gtggactcgggatttgagcatccttctgaagtacaacacgaatgcatcccacaagctatt
ctgggaatggatgttatctgccaagctaaatctgggatggggaaaacggctgtgtttgtc
ctatctactttgcagcagattgaccctgtggccggccaagtttctgcacttattctttgc
catactagggaattagcttaccagatttgccatgagtttgagagattcagtacctacttg
ccagatctcaaggttgctgtcttctatggtggtgtcactatcaaaaatcacaaggacttg
ctgaaaaacgagtgcccccacattgttgttgggactcctggaagaatactagcactcgca
agagataaagacctctcattaaagaatgtgaggcattttatcctcgacgagtgtgacaag
atgcttgagtcacttgacatgaggagagatgtgcaagagatattcaagatgacgccccat
gataagcaagtaatgatgttctctgcaacactcagcaaagacatccgaccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgacgaagccaagttgactctccat
ggtctagtacagcactacatcaagttaaccgaggcagagaaaaaccgcaagctgaatgat
ctcctcgatgcactggacttcaaccaggtcgtcatattcgttaaaagcgtgagcagagcg
gcagagttgaacaagttactctcagagtgtaattttccctcgatatgtatccattctgga
atgaaccaagaagaaaggttgaagcgctacaaaggattcaaggagggtcagaacaggatt
cttgtcgccactgatttggttggtagaggaattgatattgaacgtgtcaatattgttatc
aattatgacatgccagactctgctgacacctacttgcacagggtcggcagagctggtagg
ttcggcaccaaagggctggcgattacatttgtatcatctgcttcggactctgatgtcctt
aatgatgttcaggagaggtttgaggttgacataaaggagcttcctgaacaaattgacact
gccacatacatgccatcttaa
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