Fragaria vesca (woodland strawberry): 101311942
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Entry
101311942 CDS
T02666
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03430
Mismatch repair
fve03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101311942
03460 Fanconi anemia pathway
101311942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101311942
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
101311942
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101311942
NCBI-ProteinID:
XP_011458719
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Position
LG2:17984886..17990798
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AA seq
953 aa
AA seq
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MEATPPPSDSPSIKPINKSVVHRICAGQVILDLSAAVKELVENSLDAGATAIEISLKDYG
KEWFQVIDNGCGISPGNFKVLALKHHTSKLAGFPDLQSLTTFGFRGEALSSLCALGNLTV
ETRTKYEQVATHLSFDHSGVLVAEKKTARQVGTTVTVKNLFVNLPVRCKEFSRNIRKEYG
KLVSLLNAYALIAKGVRLVCTNAIGRNAKSVVLKTQGSGSLKDNIVTLFGMSTFSCLEPV
SISVSDSCKVEGFLSKSGQGSGRNMGDRQFFFVNGRPVDMPKVTKLVNELYRGANSQQHP
IAILNFTVPTRACDVNVTPDKRKVFFSDESFILVALREGLQQIYSSSNARYSVNKLEEPA
KEAGRSQFCSPDQRSCKQLTRDDDEDVPEEVLVVEKSEESTEEGGRSEFYFPGHRSHMFL
KQSSIDSVPKEISPEDHSPEGDAPLKVVETDSEPTHDEEGFSQENSMWKDSHENSMGKDF
ALRVHNIKKAHGTSQLTKNLTSMRADRIAAKEDSYSRPSSVQASLNEFVTVTKRKHDSIS
PVLSEMPVLRNQSLQCQSKTDLPDAVSKPPFNHDRIDDSTEVDNSSEVCVDEPSKYLRAD
RIHNKVRVPVSPGGKNEGERLGEAQQETVPLADMTPTASPSRDINLTEDLPAASPSSCVL
LNTPKPSSDLMMCSTLTFSFQDLKTRRQQIFSRLQSSMPGVKAQRCYAAATLELSQPENE
ERKARALAAATKELERLFRKEDFGKMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFE
RLSQSTILNQQPLLRPLRLELSPEEEVVASMHIDIIRKNGFSLEEDPHAPPCHHFKLKAV
PFSKNITFGVEDVKDLISTLADSHGECAIIGSYKMDTVDSVCPSRVRAMLASRACRSSVM
IGDALGRNEMRKILEHLAGLKSPWNCPHGRPTMRHLIDLKTIRRSEENDEAES
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacacctcctccgtccgattcaccgtctataaaacccataaacaagtccgtg
gtccaccggatctgcgccggccaagtcatcctcgacctctcggccgccgtcaaagagttg
gtcgagaacagcctcgacgccggcgccaccgccatcgaaatctccctcaaagactacggc
aaagagtggttccaggtcatcgacaacggctgcggcatttcgccgggaaacttcaaggtc
cttgccctcaagcaccacacttccaagctcgccggattccctgacctccagtctctcacg
acgttcggcttccgcggcgaggccttgagctctctgtgtgctttggggaacttgacggtg
gaaaccaggactaagtacgagcaggttgctacgcacttgagttttgaccactccggtgtg
ctggtggcggagaagaagacggcgcggcaagtcggcacaaccgtgacggttaagaatctg
tttgtgaatttaccggtgaggtgcaaggagttcagtcgcaacattcggaaggagtatggg
aagcttgtttctctactgaatgcctatgctcttattgcaaaaggagttcggttagtttgc
acgaatgccataggtagaaatgcaaagtctgtggtgcttaaaacgcagggaagcggttca
cttaaggataatattgtgacattgtttgggatgagcactttcagttgtttagagcctgtg
agtatatctgtatccgatagttgcaaggttgaagggtttctttccaagtcaggacagggt
agtggtcggaacatgggagacaggcagttcttttttgtgaatggccgacctgtggatatg
cctaaagttacaaagcttgtgaatgagttgtatagaggggcaaactcccagcagcatccc
attgccatattgaatttcactgttccgacaagagcgtgtgatgtcaatgttactcctgat
aaaaggaaagtgttcttttctgatgagagctttatactggttgccttaagggagggtctg
cagcagatatattccagtagtaatgctcgttactctgttaataaactggaggagcctgcc
aaagaagcaggcaggtctcagttttgttcacctgatcaaaggtcttgtaaacaattaact
agagatgatgatgaggatgttcctgaagaagttcttgttgttgagaaatctgaggagtct
actgaggaaggaggcaggtctgaattctattttcctggtcacaggtcacatatgtttcta
aaacaatcatctatagattctgtacctaaagaaattagtcctgaggatcactctccagaa
ggtgatgcacctctgaaagttgtggaaactgattctgaacctactcatgatgaagaaggg
tttagccaagaaaattcaatgtggaaggatagccatgaaaattcaatggggaaggatttc
gctttaagagtacacaacattaaaaaggcccatggaactagtcaattgacaaagaatctc
actagtatgagagctgatcgaattgcagcaaaggaagattcatatagtcgcccaagctct
gtacaagcatcacttaatgagtttgtaactgtaactaaaagaaagcatgatagtattagc
ccagtcctgtctgaaatgcctgtcctgaggaaccaaagtcttcagtgtcaatccaagact
gatttacctgatgctgtttcaaaacccccatttaatcatgaccggatcgatgattctact
gaagttgataattcttctgaagtttgtgtggatgagccatccaagtatcttagagcagat
aggatccacaacaaagttagagttccagtttctcctggaggcaagaatgagggtgaaaga
cttggagaagctcaacaggaaacagtgcctcttgctgatatgacaccaactgcttcacct
agcagggatataaatctgactgaagatcttccagctgcatcaccttcctcatgtgtattg
ttgaatactccaaagccttcttctgatcttatgatgtgttcaaccttaacatttagtttc
caagacctaaagacaaggaggcagcaaatattttctagattgcaatcaagcatgcctgga
gtaaaagcacaaaggtgctatgcagctgcaacactggagctttctcaaccagaaaatgag
gagcggaaggcaagggccttagctgcagctaccaaggagttggaaagacttttcagaaag
gaagattttggtaaaatgaaggtgattgggcaattcaatcttggcttcatcattggaaag
ttagatcaagatttatttattgtagatcagcatgcagctgatgagaagtacaactttgag
cgtctgtcacaatctaccatcttaaaccaacagcctttgcttaggccgttgaggttggag
ttgtctcctgaagaagaagttgttgcttcaatgcacatagacataatcaggaaaaatgga
ttttctttggaagaggatccacatgctccaccttgtcaccattttaaattgaaagctgtt
cccttcagcaaaaacataacttttggagttgaagatgttaaggacttgatttccactctt
gctgatagtcatggggaatgtgcaatcatcggtagttataagatggacactgttgattct
gtttgcccttctagagttcgagcaatgctggcatcacgtgcatgcagatcatctgttatg
attggagatgcccttggaagaaatgagatgcggaagattcttgagcatctggcaggtctg
aagtctccttggaattgtcctcatggcaggccaaccatgcgacatttgatcgacttgaaa
accatacgcaggtctgaagaaaacgatgaagcagagtcttga
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