KEGG   Fragaria vesca (woodland strawberry): 101312015
Entry
101312015         CDS       T02666                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03030  DNA replication
fve03410  Base excision repair
fve03420  Nucleotide excision repair
fve03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101312015
   03410 Base excision repair
    101312015
   03420 Nucleotide excision repair
    101312015
   03430 Mismatch repair
    101312015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fve03032]
    101312015
   03036 Chromosome and associated proteins [BR:fve03036]
    101312015
   03400 DNA repair and recombination proteins [BR:fve03400]
    101312015
DNA replication proteins [BR:fve03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101312015
  DNA Replication Termination Factors
   ELG1-RFC complex
    101312015
Chromosome and associated proteins [BR:fve03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101312015
DNA repair and recombination proteins [BR:fve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101312015
  Check point factors
   HRAD17(Rad24)-RFC complex
    101312015
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 AAA_16 AAA_11 AAA_30 AAA_assoc_2 AAA_24 nSTAND_NTPase5 DUF815 ATPase_2 AAA_14 RuvB_N AAA_3 AAA_5 AAA_7 AAA_19 ResIII bpMoxR nSTAND3 DNAX_ATPase_lid AAA_2 TniB ABC_tran AAA_18 SLFN-g3_helicase Mg_chelatase AAA_28 AAA_25
Other DBs
NCBI-GeneID: 101312015
NCBI-ProteinID: XP_011458804
LinkDB
Position
LG2:19068993..19071818
AA seq 366 aa
MAELITPMDIDGDDTNPSSLKPNNDKGKNVAVSGPIHGEATPWVEKYRPQSLADVAAHRD
IVDTIDRLASENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYRKIILELNASDDRGIDV
VRQQIQNFASSQGLFGGETEKVPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFTLIC
NHVNKIIPALQSRCTRFRFAPLDSFHVKDRLKHVIDAEGLDVFENGLAAVVRLSNGDMRK
ALNILQSTHMASQKITEEAVYLCTGNPLPKDIEQISHWLLNESFTEAFKRISDMKTIKGL
ALVDIVREVTMFVFKIKMPPDVRVLLINDLADIEYRLSFGCNDKLQLGSIIATFTKARSA
LVAAAK
NT seq 1101 nt   +upstreamnt  +downstreamnt
atggctgagctcatcactcccatggacatcgacggcgacgataccaacccctcctctcta
aaacccaacaacgacaagggcaaaaacgtcgccgtttccggccccatccacggcgaagcc
actccttgggtcgagaagtaccgccctcagtccctcgccgacgtcgccgcccaccgcgac
attgtcgacaccattgacaggttggctagtgagaacagattgccacacctcctgctgtat
ggccctcctggcactgggaaaacttcgacaattcttgccgtggcacgcaaactctatggt
gcacagtatcgtaagataattctcgagctgaatgcgtcggatgacaggggaattgatgtt
gtgaggcaacagatccagaattttgcaagctcacagggtttgtttgggggggaaacggaa
aaggtacctgtgaagttggtcttactggatgaggcagatgctatgactaaggatgctcaa
tttgctttgagaagagtgattgagaaatacacgaagaacactaggtttacactgatctgt
aaccatgtcaacaagattattcctgcgttacagtcaagatgcacacgtttccggtttgct
ccacttgattcttttcatgtaaaagaccgactaaaacatgttatagatgctgaagggctt
gatgtatttgagaatggcttagcagcagttgtacggctgagcaatggtgacatgagaaag
gctctgaacattctgcagtcaactcatatggcttcacagaagataacagaagaagcagta
tatctttgcacaggaaatccattgcctaaggacattgagcaaatatctcactggcttttg
aacgagtcatttacagaggctttcaaacgaatttctgatatgaagacaataaagggattg
gccctggtagatattgtaagagaagtgactatgtttgtttttaagatcaagatgccacca
gatgttcgagttttgttaatcaatgatttagctgacatagagtacaggttgagctttggg
tgcaacgataaattgcaacttggatcaataattgctacttttacgaaagctcgctctgca
cttgttgctgctgcaaagtag

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