Fragaria vesca (woodland strawberry): 101312325
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Entry
101312325 CDS
T02666
Name
(RefSeq) probable E3 ubiquitin-protein ligase HIP1
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101312325
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101312325
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101312325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf_RING_Vps8
zf-RING_11
zf-ANAPC11
zf-RING_Vps41
zinc_ribbon_16
zf-RING_16
zf-C3H2C3
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
101312325
NCBI-ProteinID:
XP_004294077
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Position
LG3:complement(10047536..10051573)
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AA seq
551 aa
AA seq
DB search
MGQRNMLCPSQMMDLEMYQQGEAYLCPPPSIHFGGSTGGSTSIQQPNIHTMVTASGSSTS
FDAQHLPERYENAPFYGMTQYNGQPHHLDLGVATPANFYYSYMTPSSSSGVLPVPMNHGA
AESVPSSSNYGVVGIPADEYGRNSRIMDDLRGPCKRKNPECLPGNFQYFNASASPSTSVP
PLNIRHPEGVAVMDAVNFALPPQFIGTGNPPIMEAGPQMSMRNRSATTGLETVPTHDHNH
MSQGNYVGQRFQPAGTLWLDQHLSSNSGDGGASAWNQVPIPFMHGGNVGGGSMDSVNMGM
QRYHDSSSSRSSSILRHPPPLNHRHQNHHVATPPMQGLSGHNLNLPHVTTEPSYRLPSSS
SRGSTRNPSQNGMEIGRRQPGPIPQTGFRIYRPHQGVISETALRHHNLAHWRVLGVDEGV
ILDVPEFGNFGDQHRDMRLDIEDMSYEELLALGEQIGHVNTGLSENSISKQLKTRSYLSS
RTVINLEEAGCPEKEVDFCIICQDYYKNQEKIGTLHCGHEYHADCLKKWLLVKNVCPICK
SEALITGKKDV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggggcaaagaaatatgctatgccctagtcagatgatggatttggaaatgtatcaacaa
ggtgaagcttatctctgtccgccaccctccatccactttggcggctcaactggcggctca
accagtatccaacagcctaatattcacactatggtaacagcttcagggagcagtactagt
tttgatgcccaacatttaccggagcgttatgagaatgccccattctacggaatgacccag
tataacggtcagcctcatcatcttgatttgggtgttgcaactccagctaacttttattat
tcgtacatgaccccttcatctagctctggagtgttacctgttcctatgaatcatggggcc
gctgagtcagtgccttcttctagcaattatggagtcgtcggaattcctgcagatgagtat
ggaaggaatagtcggatcatggatgatctcagaggtccatgcaagagaaagaatcccgaa
tgcctgcctgggaatttccaatatttcaatgcctctgcaagccctagtacttctgtgcca
cctttgaatattaggcatcctgaaggggtagctgtaatggatgctgtaaacttcgcctta
cctcctcagttcattggaactggcaatccaccaattatggaagctggtccccagatgagc
atgaggaaccgttcagctacaactgggttggaaactgtaccaacacatgatcacaaccat
atgagtcaaggaaactatgtgggccagcgctttcagccagctggaacactgtggttggac
caacacttaagtagtaatagtggagatggaggcgcttcagcctggaatcaagttcctatt
ccttttatgcatggtggcaatgtcggcggaggttccatggacagtgttaacatgggtatg
caaagatatcatgattcatctagcagcagaagttcgtctatcctccgacatcctcctccg
ctcaaccaccgtcatcagaatcatcacgtagctacaccacccatgcaaggattgagtggc
cacaacctgaatcttcctcatgtaaccacagaaccttcatatagactaccctcaagttct
tcacgcggctccaccaggaatccatctcagaatggtatggagatcggtcgtaggcaacca
ggacctattccacaaaccggctttaggatatacaggcctcaccaaggagtaatttccgag
acagctctaagacaccacaaccttgcgcattggagagttcttggggttgatgagggtgtc
atactagacgttccagaatttggcaactttggtgaccagcacagagatatgcggttggac
atagaggacatgtcgtatgaggagcttcttgcattgggggaacaaattggccatgtaaac
actggattgtcggagaacagcattagcaaacaattaaagacaaggagttatttatcatct
cgtacagtaataaatctggaagaagctggatgtccagagaaggaagttgatttttgcata
atatgccaggattattacaagaaccaggaaaagatagggactcttcattgtggacatgag
tatcatgcagattgcttaaagaagtggttgcttgtgaaaaatgtctgccccatctgcaaa
tccgaagcactgatcacagggaagaaggatgtatag
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