Fragaria vesca (woodland strawberry): 101312477
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Entry
101312477 CDS
T02666
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT3
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101312477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101312477
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101312477
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
101312477
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
FAIM1
Motif
Other DBs
NCBI-GeneID:
101312477
NCBI-ProteinID:
XP_004306667
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All DBs
Position
LG7:3508563..3511355
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AA seq
314 aa
AA seq
DB search
MDPENMEIVPPSDLMDEDEIHGRPRQLFTVPKPRNNGNNNPGTTSVHELLECPVCTNSMY
PPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEI
FPYYSKLKHEAVCNFRPYNCPYAGSDCSVVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVK
SNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYTYSLEV
GGNGRKIIWEGNPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
QNPEGGACIIPLCS
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggacccagaaaacatggagattgttccgccgtcggatttgatggacgaagatgagatc
cacggccggcctcgccagttatttacagttccaaagcctcgcaacaatgggaataacaat
ccgggaacgactagtgttcatgagcttcttgaatgccctgtttgcacaaattcaatgtac
cctccaatccatcagtgccacaacgggcataccctttgctctacctgtaaaacaagagtg
cacaatcggtgcccaacttgtagacaggaacttggtgacataaggtgtctagcattggag
aaggtagctgaatcacttgaactgccttgcaagtactgctctcttgggtgccctgagata
ttcccgtattatagtaaactgaaacatgaggctgtatgcaacttcagaccatacaactgt
ccttatgctggatcagactgctctgttgttggggatattccattccttgttgctcatcta
cgggatgaccacaaggtggacatgcattctggatgtacttttaaccatcgttacgtcaag
tctaatccccgcgaagtagaaaatgccacatggatgctaactgttttccactgctttggt
cagtacttctgtctccattttgaagccttccagcttggtatggctcctgtttatatggca
ttcctccgtttcatgggggatgaaacagaagctcggaactacacatacagccttgaggtt
ggaggaaatggccgaaagatcatatgggaaggaaacccaagaagcataagggatagccac
aagaaggttagagacagccatgatggcctcataatacagcgcaacatggcacttttcttc
tctggtggggataggaaagagctgaagctgcgagttacaggacgaatatggaaagaacag
cagaacccagaaggtggtgcgtgcatcatacctctctgtagttag
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