Fragaria vesca (woodland strawberry): 101312690
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Entry
101312690 CDS
T02666
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03420
Nucleotide excision repair
fve04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101312690
09124 Replication and repair
03420 Nucleotide excision repair
101312690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101312690
03400 DNA repair and recombination proteins [BR:
fve03400
]
101312690
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101312690
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
101312690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
101312690
NCBI-ProteinID:
XP_004290970
LinkDB
All DBs
Position
LG2:complement(19911252..19914724)
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AA seq
448 aa
AA seq
DB search
MWREIGDREVGKLRPSSFSNRVKSTRIQTLQLSNQKEIVSPHRGSINSLQVDLTEGRYLL
SGASDASAAVYDIQRGTDYDGGGAISKHKAIFVVDKQHENGHKYAVSSAVWYPVDTGLFV
TGSYDHHVNVWDTNTTQVVMNFKMPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP
PILQRSSANKGPTVKPVLAGQSSLGKARAPQRKHSNGNGVKQSSTSKSLKGSMKQRLHPG
MLSSQDRATAHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIESGCNTLVNFETVRLQTSR
PIQLATSPNSPLAFVPCMTAVKAFDMWSGRTALTFRGHYEHVNCCWFSLQDQELYTGGND
RQILVWSPSRLISDEDEGPVKDVDNWSD
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgggaaatcggcgacagagaagtggggaagctccgcccaagttcgttctcaaat
cgggtcaagtcaactcggatccagacgctccagctctccaatcagaaagaaatcgtctcc
cctcaccgcggctccatcaactctctccaggtcgatttgacggaggggcgctacttgttg
tccggcgcctccgacgcgtcggccgccgtgtacgacatccagcgcggcacggattacgac
ggcggcggagctatttcaaagcacaaggcgattttcgtggtggataagcaacatgagaac
gggcacaagtacgcggtgtcgtcggcggtttggtatccggtggacaccggactgtttgtg
acggggtcttatgatcatcacgttaatgtgtgggatacgaatacgactcaggtggtgatg
aatttcaaaatgccggggaaggtttacaggactgccatgtcttcactggcaacttctcat
atgttgattgctgctgggactgaagacgtgcaagttcggctatgcgatattgcttctgga
gcatttgctcacactttgtccggtcaccgcgatggtgtaatgacagtggaatggtctact
tctagcgagtgggttttggttacagggggatgtgatggtgcaatccgattttgggacatt
agacgtgctggatgttttcttgttttagatcagtcccagtctcagcttggcagacgccct
ccaatcctgcaacgctcctctgcaaataagggtccgacagttaagcccgtgttggctggt
caaagctcattaggaaaagcacgggcaccgcaaaggaaacattctaatggaaatggtgtg
aagcaatcatccaccagtaaaagcctaaagggatctatgaagcaaagattacatccagga
atgttgtctagtcaggatcgtgctactgctcattatggtgctgttactgggttaaaagtt
actgatgacggcatgtatctactaagtgcaggttctgattcaagactaagactgtgggat
atagaatctggctgcaatacgttggtgaactttgaaactgtgcgcctgcagacaagcagg
cccatacagttggccactagcccaaattcaccacttgcttttgttccatgcatgacagct
gtgaaggcatttgacatgtggtcaggtaggacggccctgacatttcgtggtcactatgaa
catgtgaactgttgctggtttagtttgcaggatcaggaactatacacaggtggcaatgat
agacaaatcctagtatggtcaccatccagattgatttctgatgaggatgaaggacctgtt
aaggatgtggataactggagtgactga
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