Fragaria vesca (woodland strawberry): 101312862
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Entry
101312862 CDS
T02666
Name
(RefSeq) spastin
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101312862
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
fve04812
]
101312862
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
101312862
Membrane trafficking [BR:
fve04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
101312862
Cytoskeleton proteins [BR:
fve04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
101312862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
Vps4_C
AAA_5
NPHP3_N
AAA_16
AAA_22
AAA_14
TIP49
Mg_chelatase
AAA_2
DUF815
AAA_25
RNA_helicase
nSTAND3
IstB_IS21
MCM
AAA_24
NACHT
nSTAND6
Motif
Other DBs
NCBI-GeneID:
101312862
NCBI-ProteinID:
XP_004306900
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All DBs
Position
LG7:6580294..6586751
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AA seq
490 aa
AA seq
DB search
MSFLKGLIDSFGSVFSESSAASSSYPNPSAPDSSAMDGVAGASVTNERVAYKLKGYFDLA
KEEIAKAVRAEEWGLVEDAVAHYNCAQRILAEASSTPVPSFISSSEREKVKSYRQKISKW
QGQVSDRLQVLSRRPGGTPINKTVAPARTAAATPTTSSSRNHVIPKTLHPSTSMPATRIQ
TNNIVRSKPVQDSGGGYDEKLVEMINSAIVDRSPSVKWEDVAGLEKVKKTLMEMVILPTK
RRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV
RTLFMVAISRQPSVIFMDEIDSIMSTRQANENDASRRLKSEFLIQFDGVTSNPNDLVIVI
GATNKPQELDDAVLRRLVKRVYIPLPDLTARRLLLSHKLKGQAYSLPSGDLEQLARDTEG
YSGSDLQALCEEAAMMPIRELGENILTIKANQVRPLRLEDFQKSMTVIRPSLSKSKWEEL
EQWNEEFGSN
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcctcaaaggcctcatcgactctttcggctccgtcttctccgaatcctccgcc
gcctcctcctcatacccaaaccctagcgctcccgattcttccgccatggacggcgtagct
ggtgcttcggtcacgaacgagcgcgtggcgtacaagctcaagggctacttcgatttggcg
aaagaggagatcgccaaggctgttagggctgaggaatggggcttggttgaagacgccgtt
gctcactataattgcgcccagagaattctagctgaagctagctccactcctgtgccttcc
tttatcagctccagtgagcgagagaaggtgaaatcgtatcgtcaaaagatatcaaaatgg
cagggtcaagtttctgataggttacaagtcttaagtagacgtccaggtggtacgcccata
aacaagacagtagctcctgcacgaacagctgcagctacaccaacaacgtcaagttcacga
aatcatgtgatacccaagactttgcatcccagtacaagcatgccagcaacaaggattcag
accaataatattgtaagatcaaaacctgtgcaagattctggtggaggttatgatgaaaag
ttggttgaaatgataaatagtgccatagtggatagaagtccttcagttaaatgggaagat
gttgccggacttgagaaggtgaagaaaactttgatggagatggttattttaccaactaag
agaagggatttgtttactggccttcgaaggccggctcgaggtctgcttctgtttggtcca
cctggtaatgggaaaaccatgcttgctaaggcagttgcttcagaatcagaggcaaccttt
tttaatgtatctgcatcttcactgacgtccaaatgggtgggagaggctgaaaagcttgtg
cggacacttttcatggttgctatatccagacagccatctgtaattttcatggatgagatt
gatagtatcatgtcaacaaggcaggcaaacgaaaatgatgcaagtagaaggttgaagtca
gagtttctaattcaattcgatggagtgacatcaaatcctaatgatctagtaattgtgatt
ggtgctactaataagcctcaagaactagatgatgcagttcttaggagattggttaagaga
gtatacatacctttaccagatctaactgctaggagacttctcctaagtcacaaacttaaa
ggccaagcatattccttaccaagtggagatcttgaacaacttgcaagagacaccgaaggt
tattcaggaagtgatctacaagcattgtgtgaagaagcagcaatgatgccaattagggaa
cttggtgaaaacatactcaccatcaaggcaaatcaggtgagaccactaagacttgaagat
tttcagaagtcaatgactgtaatcagaccaagtttaagcaaaagcaagtgggaagagctt
gaacaatggaacgaggaatttgggtctaactga
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