Fragaria vesca (woodland strawberry): 101313160
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Entry
101313160 CDS
T02666
Name
(RefSeq) uncharacterized LOC101313160
KO
K10756
replication factor C subunit 3/5
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03030
DNA replication
fve03410
Base excision repair
fve03420
Nucleotide excision repair
fve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101313160
03410 Base excision repair
101313160
03420 Nucleotide excision repair
101313160
03430 Mismatch repair
101313160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fve03032
]
101313160
03036 Chromosome and associated proteins [BR:
fve03036
]
101313160
03400 DNA repair and recombination proteins [BR:
fve03400
]
101313160
DNA replication proteins [BR:
fve03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101313160
DNA Replication Termination Factors
ELG1-RFC complex
101313160
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
101313160
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101313160
Check point factors
HRAD17(Rad24)-RFC complex
101313160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
TIP49
Motif
Other DBs
NCBI-GeneID:
101313160
NCBI-ProteinID:
XP_004289134
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Position
LG1:complement(9264754..9268231)
Genome browser
AA seq
781 aa
AA seq
DB search
MENNWSRHSRTSQTSLKPRRSGYEPSDNETDFQDTPFYGHNRKISGGLEPEVTKAAGLEF
ARNISPLKHGRRHSSMFEYDASAARNDAVVSPVRRRTSKSPYKQRREDVTVRSPIAGSET
RRNISPLSKAERRRYVSPLKREKEGHDVNDADEIVNSNRKQSQRRAGRDPQSRRSATAPR
VRARSEVELQSNRDVTPTKGERRPSPLSQALVRTTPTVRERTPSPITKGLINKQRQHTKS
PSVGEINEMIANVELSKTPPKANGAPLAFGSSDSIAPGDIFFSRECKILALPKTVNPIPK
PKNVSGFENRLTMPNVKMVTQRGNGFDHNARGTPSSYGLSQTTPTTTTTSSALSRQSSKM
SGTSGSTTASAKKFTANRGKSESHSLFACMRKGGSCRKTKSPERSPVFNEASFIQKAYVV
QSLRQFWADKHQPASLNGFTSHKQEAQLLKDLVIDNKFPHILFTGPAGSGKKALTMAFLR
ETYGDASWDVSHDLRHFQIQEQMSMQVMVPLTSSAHHIELNVRVEANARYALMGLVKEIN
SENEIAPEVSTVHIKGNHKVLVLYDVDQAAEHIQHLIKWIMDCYSEAVKLILCCQNDDDI
VESVKNRCKVIKLEAPVTQEITEVLAQIARKENFDLPMSFANKIAHKSKQNLRKAIMGLE
ATKAHNYPFVDEQPVPIGWEEVLVEVAAEILADPSPKRLFFIRGKFQKLLVGFVHPKLIL
LKLVEQFLKAMDDTSKRDLYYWHAYYEKRLPEGASALLKLEEFVAKFMSIYRKSANSRQY
V
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggagaataactggtcaagacatagtagaacttctcagacctcactgaagccccggcgc
agtggttatgaaccatctgataacgagactgatttccaagatacacccttttatggccac
aataggaagatcagtggaggcttggaacctgaagtgacaaaagctgcagggttggagttt
gcacgaaacatcagccctttgaagcacggccggaggcactcttcgatgtttgaatatgat
gcctctgctgcaagaaatgatgcagtagtaagccctgtccgaagaagaaccagcaaatca
ccatacaagcaaagaagagaagatgttacagttcgttcaccaatagcaggttctgaaact
cgcagaaatatcagtcccttgtcaaaagctgagcgcagaagatatgtttctcctttgaaa
cgagaaaaagaagggcatgatgtgaatgatgctgatgaaattgtgaactcaaacaggaaa
caaagccaaagaagggctggtagagacccccaaagcagaagatcagctacagccccaaga
gttcgagcaagatcagaagtcgaactacaaagcaaccgtgatgtaacaccaactaaaggt
gaaagaagaccatcaccattgtcacaggccctggttagaacaacaccaactgtaagggag
agaacaccatccccaatcacaaaagggttgatcaataaacaaagacaacacacaaaatcg
ccgtctgttggtgaaatcaatgagatgattgccaatgtagagctgtctaagactcctcca
aaggctaatggtgctccactagcttttggaagttcagattctattgcaccaggtgatatt
ttcttctctcgtgagtgcaaaatcttggcactccccaaaactgtcaatcccataccaaaa
ccaaagaatgtcagtggttttgagaaccgcttaactatgcctaatgtcaagatggtaact
caaagaggaaatggttttgatcataacgctcgagggactccatcgagctatggtttgtca
cagacaaccccaacaacaacaacaacaagctctgcattgagcaggcaaagcagtaagatg
agtggtacaagtgggagcacaactgcgagtgccaagaaattcacagcgaacagagggaaa
agtgaaagtcactcactgtttgcttgtatgagaaagggagggtcttgtcgaaaaacaaaa
tcacctgagcgttctcctgttttcaatgaagcttcattcattcagaaggcatatgtggtt
caaagtctaagacagttttgggctgataagcatcaaccggcttcattgaatggattcact
agccacaagcaagaagctcaacttctcaaggatctggtaattgacaataaatttcctcac
attttgtttaccggaccagctggttctgggaaaaaagctctaacaatggctttccttaga
gaaacatatggcgatgcaagctgggatgtatctcatgatttaagacacttccagattcag
gaacaaatgtcgatgcaagtaatggttccattgacatccagtgctcaccatatagagctc
aatgtgcgcgtggaagcaaatgctagatatgcattgatgggtttagtgaaggaaatcaac
agtgagaatgaaattgctcctgaagtcagcactgttcatatcaagggaaatcataaagtg
ctagttctttacgatgttgaccaagcagctgaacacattcagcatttgatcaaatggata
atggactgttactcagaagctgttaaactcattctctgctgccaaaatgatgatgacatt
gttgaatcagtgaaaaatcggtgcaaagttatcaagctcgaagctcctgtgactcaagaa
attacagaagttcttgctcagatagcaaggaaggaaaactttgacctacctatgagcttt
gctaataagattgctcacaaatctaagcagaacctgagaaaagcaatcatgggtcttgaa
gcaaccaaagcacacaattatccttttgtagatgagcaaccagttccaatcggatgggaa
gaggtacttgttgaagttgctgcagaaatcctagctgatccatcaccaaagaggttattc
ttcatccggggaaagtttcaaaagcttctcgtgggttttgtacatccgaaactgatttta
ctgaagctggtagaacagttcctgaaagcaatggatgatacttctaaaagggacttatat
tattggcatgcttactatgagaaaagactcccagaaggagcaagtgctttactcaaacta
gaagaatttgtggcgaagttcatgagcatataccgtaagagtgccaacagccgccagtat
gtataa
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