Fragaria vesca (woodland strawberry): 101313246
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Entry
101313246 CDS
T02666
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03030
DNA replication
fve03420
Nucleotide excision repair
fve03430
Mismatch repair
fve03440
Homologous recombination
fve03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101313246
03420 Nucleotide excision repair
101313246
03430 Mismatch repair
101313246
03440 Homologous recombination
101313246
03460 Fanconi anemia pathway
101313246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fve03000
]
101313246
03032 DNA replication proteins [BR:
fve03032
]
101313246
03400 DNA repair and recombination proteins [BR:
fve03400
]
101313246
Transcription factors [BR:
fve03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101313246
DNA replication proteins [BR:
fve03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101313246
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101313246
MMR (mismatch excision repair)
101313246
DSBR (double strand breaks repair)
HR (homologous recombination)
101313246
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
Rsm22
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
101313246
NCBI-ProteinID:
XP_004287611
LinkDB
All DBs
Position
LG1:complement(6553627..6556438)
Genome browser
AA seq
670 aa
AA seq
DB search
MPVQLTPNAVPIINGGDVNLKPLMQVTDVKLIGSQERYRLLLSDGVWAQHAMVATQLNEL
FKTGRVRKGSVVQLTEYICSEVQNRKIIVALNMETIVLDSEIIGNPKPYGESGPTAQTAL
PKNNFEQSAYGNNHMMGQGPVPKWQNPRPSFHPENSVPSMPSARPTYQSESFYNNVPNPR
PTFRPEMSAPSVPNFRATVQPSYQPPPQYKNRGTVFKNEAPARIIPINALNPYQGRWAIK
ARVTAKGDQRRYNNARGDGKVFSFDLLDSEGGEIRVTCFNAVLDRFYDIIEVGRVYLISK
GSLKPAQKNFNHLKSDWEITLDASSTVELCPDEDGSIPAQLFDFKPISAVESAESNSILD
VIGVVTSVNPSTTILRKNGMETQRRILHLKDWSGMSVEITLWGEVCNREGQRLEEMLASG
VFPVLAVKAGKVNDFSGKSIGTIHSTRLYIDPPDLPEARQVRDWFDRGGKDAASVSISKE
FMPGGVTKNEIRKTVSQIKDEGLGRSDKPDWVTVRATISFIKTDSFCYTACPLMIGDRQC
SKKVSRSGDRWQCDRCNQEFEECDYRYLLQAQIQDSTGLTWVTAFQESGAEILGCTAKEL
YFLKYDGQDEEKFADIVRSSIFNHFMLKLKIKEELYGDEQRVKITVVKADTVNYSAESRY
MLDVISKFSR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcagctgacgccgaacgcggtcccgatcatcaacggcggcgatgtcaacctg
aagccgctgatgcaggtcaccgacgtcaagcttatcggctcgcaggagaggtaccggctc
ctgctctccgacggcgtctgggctcagcacgccatggtcgcgactcagctcaacgagctg
ttcaagaccggccgggtcaggaaaggctccgtcgtgcagctcaccgagtacatttgcagc
gaagtccagaaccgcaagattattgtggcgctgaatatggaaactattgtactggactca
gagattattgggaatccaaaaccatatggtgagtctggtccaactgctcaaactgcgttg
ccaaagaacaattttgagcagtctgcctatggcaacaatcatatgatgggccaagggcct
gttcccaaatggcagaatcccaggccttcttttcatcctgaaaactctgttcccagtatg
ccaagtgccagaccaacataccagtccgaaagcttttataacaatgttccgaatcccaga
cctacatttcgtcctgaaatgtcagctcccagtgtgccaaatttccgagctacagtgcaa
ccttcctaccagccacctccacagtataaaaatcgtggtaccgtgttcaagaatgaggca
ccagcacgtattatacctattaatgctctgaatccttatcagggaaggtgggcaatcaag
gcaagagtcactgcgaaaggggatcagcgtcgttataacaatgctcgaggagatggtaag
gttttctctttcgacctccttgactctgagggtggggaaataagagtgacctgctttaat
gctgttcttgaccgcttttatgatattattgaggttgggagagtttacttgatatcaaag
ggtagcttaaaacctgcgcagaagaactttaatcatctgaagagtgactgggagataact
ttggatgcgagttcaacagtggaactgtgccctgatgaagatggttctataccagcccag
ctgtttgacttcaagcctattagtgcagttgagagtgctgagagtaattctatacttgat
gttattggtgttgtgacttctgtcaacccttctactactatcctgagaaagaatggtatg
gaaactcagagaagaattctgcatctgaaggattggtctggcatgagtgttgagataacc
ctatggggggaggtttgtaacagggaaggtcaaagactggaagagatgttggcttctggt
gtttttccagttttagctgtcaaagctgggaaggttaacgacttcagtgggaaatccata
ggaacaattcattctacccggctgtacatcgaccccccagatttgcccgaggctcgtcag
gtgagggactggtttgatcgagggggaaaggatgccgcttccgtgtccatctctaaggaa
tttatgccaggaggtgtaactaagaatgagatacgcaaaactgtttctcagatcaaggat
gaaggtcttggaagatcagataagccagactgggtcactgtgagggccacaatatctttc
attaaaactgattctttctgttacacagcatgcccattgatgattggagataggcagtgt
agcaagaaagtgtcgaggtcaggagacagatggcagtgtgacaggtgcaatcaagaattt
gaggagtgtgattatagatatcttcttcaagctcaaattcaggactctactggattgact
tgggtgacggcttttcaggaatcaggggcagagatcttgggttgcacagcaaaggagttg
tacttcttgaagtatgacgggcaggatgaggaaaagtttgcagacatagtccggagcagt
attttcaaccattttatgttaaagcttaagatcaaggaggagttgtatggcgatgagcag
agggtgaagatcacagtggttaaggcagatacggtgaactattctgcagagagcagatac
atgctcgatgtgatttcaaagttttctaggtaa
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integrated database retrieval system
