Fragaria vesca (woodland strawberry): 101313517
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Entry
101313517 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101313517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101313517
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101313517
Spliceosome [BR:
fve03041
]
Complex A
U2 snRNP components
U2 related factors
101313517
Complex B
101313517
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
101313517
NCBI-ProteinID:
XP_011465010
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All DBs
Position
LG5:complement(19016916..19024041)
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AA seq
1124 aa
AA seq
DB search
MEDSKHKSRKEGEAKRSHRGQDREKEKKGDRHRDKDRVDKRDRDSRRYEREKSSDSEERY
MRKKHRDKDIDRRSRDDERERSKDKKRDKDKERDKEREREKVKEKEKRERKEREREREKE
RERKERVREAEERDREKREREKEKDRDRRIRERERHRDADTDDSEDDVRERGRKRHKKSD
NEYKERDRERSISRSNRHRDDGIESPRKRSDGDDSDKTEKPTREEELEDEQRKLDEEMEK
RRRRVQEWQELKRKKEEDEREKLGEENVDETKSGKAWTLDGESDDEEAGKSETAMDVDME
VNGDVLTDGEIIDAVVPDTDNTTAAAENEEVDPLDAFMLSVVMPEVEKLNTTVEPSSVDD
KNKEKKVDSSNGEKLRASSSKGIGRIIPGDSDSDYGDLENDDDPLENEDDDEFIKRVKKT
KAEKLSLVDHSKIDYIPFRKNFYIEVKEISRMTPEEVGAYRKQLELKIHGKDVPKPIKSW
HQTGLTSKILETIKKLNYEKPMPIQAQALPIVMSGRDCIGIGKTGSGKTLAFVLPMLRHI
KDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKR
GAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNVRPDR
QTVLFSATFPRQVEVLARKVLDKPVEIQVGGRSVVNKDIMQLVEVRQENERFLRLLELLG
EWYEKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIADFKSNVCNLLI
ATSIAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDL
VKALELSEQVVPDDLKSLADSFMAKVKQGLAQAHGTGYGGSGFKFNVEEDEVRRAAKKAQ
AKEYGFEEDKSDSEDEDEGIRKAGGDISQQAALAQIAAIAAASKATTAMQTPTPAAQHLP
DGLPVPLPGLLGVSVALPGTAAVVPGTGLPLVGSDGAARAAALAAAMNLKHSLAKIHADA
MPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVPGPGDRKLY
LFIEGPTEQSVKRAKAELKSVLEEISNQALSLPGGNQQGRYQVI
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggaagatagcaagcataaatctaggaaggaaggggaagctaagaggagtcaccgaggt
caggatcgagagaaggaaaagaaaggagatagacacagagacaaagatagagtagataag
agagaccgtgatagccgacgatatgagcgagaaaagagttctgattctgaggagaggtat
atgagaaagaagcatcgagataaggacattgatagacggagtagagatgatgaacgagag
agaagcaaagacaagaaaagggataaagataaagagagggataaggagagggagagggag
aaagtcaaagaaaaggagaagagggagcggaaggaaagggaaagagaaagagaaaaggag
agggagagaaaggaacgcgtaagggaggcagaggagagggatagggagaagagggagagg
gaaaaggaaaaagatcgagataggaggataagggagagggaaaggcatagggatgctgat
actgacgattcggaggatgatgttagggagcgtggtaggaagcggcacaagaagagtgac
aatgagtacaaggaaagagatcgggaaaggagtattagtaggtcaaacagacatcgggat
gatggaattgagagtccaagaaagaggagtgatggagatgattcagataaaacggagaag
ccaacccgtgaggaggagttagaggacgaacaacggaaattagatgaggaaatggaaaag
cggaggcggagagtacaggaatggcaagagttaaagagaaagaaggaagaggatgagaga
gagaagcttggggaagaaaatgttgatgaaaccaagtctgggaaggcatggactcttgat
ggagaatctgatgacgaagaagcagggaaatcagagacagccatggacgttgatatggag
gtcaatggggatgttcttactgatggtgaaattatagacgccgtcgtgccagatactgat
aatacaacagctgctgcagagaatgaggaagttgatccgttagatgcttttatgctttct
gtggttatgcctgaagttgagaagctgaacactactgtggaaccctcaagtgttgatgac
aagaacaaggagaaaaaggttgattcaagtaatggtgaaaagctgagggcaagttcaagt
aaaggtattggcagaataattcctggggattctgactcagattatggggaccttgagaat
gatgacgatcctttagaaaatgaagatgatgatgagttcataaaaagggtgaagaaaaca
aaagctgagaaactttccttagttgaccactcaaagatagattatataccattccgtaaa
aatttttatattgaggttaaggagatctcaaggatgacaccggaggaggtcggtgcgtac
cggaaacaattggaattgaagatacatggtaaggatgtaccaaagcccattaagagctgg
caccagactggacttacaagtaaaattttggaaacaataaagaagctcaactatgaaaag
ccgatgccgattcaagctcaggccctgcctatagttatgagcggtcgagactgcattggc
attggaaaaactggatcaggtaaaacccttgcatttgtactgccaatgctgaggcatatc
aaggaccagccacctgtggtagctggggatggacctattgggcttattatggcaccaacc
agggaacttgttcagcagattcacagtgatattaagaagtttgccaaggttctgggtctc
aggtgtgtgcctgtgtacggaggttcaggtgttgcacaacaaatcagtgaactgaagcgg
ggtgctgaaattgttgtctgtactcctggtaggatgattgacatactttgcacaagtgga
ggaaaaataacaaatctgcgtagagtaacttatttggtcatggatgaagctgatcgaatg
tttgacatgggttttgaacctcaaatcactcgaattgttcaaaatgtccgtccagatcgc
caaactgtgttattttctgccacttttccacgccaggttgaagttttggctcgtaaagtt
ttagacaaacctgtggaaatacaagttggcggaaggagtgttgtgaataaggacatcatg
caattggttgaagtgagacaggagaatgaaaggtttttgagattattagagttacttgga
gaatggtatgaaaaaggaaaaattttgatattcgtacaatcacaggacaaatgtgatgct
ttatttagagatctacttaagcatggatatccttgtctctcacttcatggggctaaagat
caaacagatcgtgagtccaccatagctgattttaagagcaatgtttgtaatttgttgatt
gcaaccagtattgctgccagagggctagatgtcaaggagcttgaactggtgataaatttt
gatgccccaaatcactatgaagattatgttcaccgtgttggacgtactggccgagctgga
cgaaaaggctgtgctattacttttatctctgaggaagatgctagatatgctccagatctt
gtgaaagcattggaactttctgagcaagttgttccagatgacttgaaatctcttgcggat
agtttcatggcaaaagtaaagcagggacttgcgcaagcccatgggactggttatggggga
agtggttttaaatttaatgtagaagaagatgaagtgaggagagcggcaaagaaagcacag
gcgaaagaatatggttttgaggaagacaagtcggattcagaagatgaagatgaaggtatc
cgaaaggcagggggtgatatatcacagcaggctgctcttgctcagatagctgctattgct
gctgcctccaaagctactaccgcaatgcagacacctacacctgctgcccaacatcttccc
gatggacttcctgttcctcttccaggtctccttggtgtaagtgttgcattaccaggaact
gcagcagttgtgcctgggactggtctgcctcttgttggcagtgacggggcagctcgggct
gcagcacttgcagctgccatgaacttaaagcatagcctggcaaaaatccatgctgatgca
atgcctgaacactacgaggcagagttggagataaatgattttccccagaatgctagatgg
aaagtcacccacaaggaaacattgggccctatatcagagtggactggagctgccattact
accaggggtcagtatttcccaccagggaaggttccaggaccaggagatcgcaagctttac
ttgtttattgagggccccaccgaacagtctgtcaagagagctaaagcagaattaaaaagt
gttttggaagagatctcaaatcaggcattatcacttcctggaggaaatcagcaaggcaga
tatcaagttatataa
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integrated database retrieval system
