Fragaria vesca (woodland strawberry): 101314163
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Entry
101314163 CDS
T02666
Name
(RefSeq) DNA-directed RNA polymerase III subunit rpc1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101314163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101314163
Enzymes [BR:
fve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101314163
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
101314163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
101314163
NCBI-ProteinID:
XP_004294640
LinkDB
All DBs
Position
LG3:18622095..18636784
Genome browser
AA seq
1390 aa
AA seq
DB search
MMKKVHAKTIAFTKEPFIEEEGHCRIAQWQFNAMSQSEISKMAATQIFLGRYYDSNQKPI
RGGLLDARLGPANKQCGDCETCGAKLSDCPGHFGYLVLAVPVFNVGYLSTVVDVLKCICK
SCSRIILDDKSRSRFLNVVRDPKKDKSVTMKLIVKKCTSMSSNNRSVKCPKCGYMNGSVK
RAQGMLAIVHGAVDDFKSVNPVMKDPKASINLQPHMLNPVKVFSLFKRMLDEDCELLNLK
SRPENLIMTTIAVPPIAIRPSVLVDGSQSNENDITERLKKIIQTNACVQQDLSEGSTTRF
LSNWEILQAEVALYINSDVRGVPYHMTANAKPLNGLVQRLKGKTGRFRGNLCGKRVEYTG
RTVISPDPNLKITEVGIPIQMAQILSYPERVSDHNIEKLRRCVANGPFKYPGALVLKCQN
GEEWSLKAGQKRMSHADNLKPGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT
LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILVASTQDF
LTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVDLPTPAVVKPIELWTGKQLYSVLVRPN
SNVRVYLNLTVREKSYSNRKTEDGREIEAMCPNDGFVYFRNSELLSGQLGKGTLGNGNKD
GLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSDILYGEKEKIIKKGY
DKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLCMQTLHWRNSPLIMS
QCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNTPAAKGFVASSFYSG
LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYDKTVRAANGGIVQFC
YGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEIVRSRLSEQDMTP
DGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATLQNIVQNISGVTPRQL
KVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK
EIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIEIVMSPRAAYVEVK
LDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHSHEKDRRKLHFHLY
YLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLFAEGKGLLAVMSTK
GVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDDRHMMLLADVMTFRGL
VLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVSESIIMGIPMPIGTGM
FKIKQRLPEM
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaaaagtccatgccaaaacaatagccttcacaaaagagcctttcattgaagaa
gaagggcactgcagaatagcacaatggcaattcaatgctatgtcccaatcagaaatcagc
aaaatggctgcaactcaaatttttctaggtcgatattacgatagcaatcaaaaaccgatc
agaggtggcttgttggatgcccgcttgggccctgcaaataagcaatgtggtgactgtgag
acttgtggtgcaaaactgtcagattgtcctggtcactttggatatttggtgcttgctgtc
cctgtttttaatgttggatatttaagtaccgttgtggacgttttgaagtgcatttgtaag
tcatgctctcgaataattttggatgacaaatcacgcagtcgctttttgaatgttgtgaga
gaccccaaaaaggataaaagtgtgacgatgaaattgatagtgaagaagtgtactagcatg
tcaagcaataatagatcagtgaagtgcccaaaatgtggatatatgaatggttcagtgaaa
agggctcaaggtatgctggcaattgttcatggtgctgttgatgactttaaatcagtgaat
cctgtcatgaaggatcccaaggcatccattaatctgcaacctcatatgcttaaccctgtt
aaagttttttctttgttcaaaaggatgcttgatgaggattgtgaacttcttaatcttaaa
agtagaccagagaaccttatcatgacaaccattgctgtgccacctatagccattcgtcct
tccgttcttgtggatggatcacagagtaatgaaaatgacattacagagaggttaaagaaa
attattcaaacaaatgcctgtgttcaacaggacctatcagaaggatctaccacaagattt
ttgtcaaattgggaaatacttcaagccgaggttgcgctgtacataaacagtgatgttcgc
ggtgtgccctatcacatgacagcaaatgccaagccattgaatggattggtgcagcgcctc
aaagggaagacggggcgttttcgtggaaacctatgtgggaagagggttgaatatactggc
agaactgttatttcgcctgaccctaatctgaaaattactgaggttggaatccctatccaa
atggcccagattttaagttatccagaacgcgtgtccgatcataatattgagaagttgagg
cggtgtgtagctaatggaccttttaagtaccctggtgccctagtgctcaaatgtcaaaat
ggcgaagaatggtccttgaaggctgggcaaaaaaggatgtctcatgctgataatctcaaa
cccggggacatagtcgatcgccacttagaagatggggacattgttcttttcaacagacaa
ccaagcttacatcggatgtctatcatgtgtcatagggcaaggattatgccttggagaaca
ttgaggtttaatgaatctgtatgcaacccttataatgctgattttgatggtgacgaaatg
aatatgcatgtgccgcaaacggaggaggctcgaactgaggctgttatgttgatgggggtg
caaaacaatctatgcactcccaaaaatggggagattttggttgcttccactcaagatttt
ttgacatcgtctttccttataacaaggaaggacacattttatgatcgtgcatctttttca
ctcatgtgttcatacatgggggatggtactgagcatgtggatttgccaacacctgctgta
gttaagccaatagagctatggacaggaaagcagctatatagcgtgttagttcgcccgaat
tcaaatgtcagagtatatctaaacctaactgttagagagaaatcctactccaacagaaag
actgaagatggaagagaaatagaagcaatgtgcccaaatgatgggtttgtctatttccgt
aacagtgagctattatctgggcaacttgggaagggcactttaggaaatggcaataaggat
ggacttttctctgttcttctcagagactacaaagctcatgctgctgcttcttgcatgaat
cgtgtagctaaattaagtgcccggtggatcggtaatcacggattctcaattgggattagt
gatgtacaacccagtgacatcttgtatggagagaaagaaaaaatcattaagaaaggttat
gacaaatgtgacgaccagattaagttgtacaaagaaggacagctacgacttgcacctggt
tgtgatgctgcccaatcacttgaatctgggattactgcagttttaaatgatattcgagac
caaactggaaagttgtgcatgcaaacgctacattggagaaacagtcccctgattatgtcc
cagtgtggttccaagggatctgctatcaatatcagtcagatggttgcgtgtgttggtcaa
caatcagttggtggtcgtcgtgcaccaaatgggttcatagatcgaagccttcctcacttt
cctagaaaagtgaatacccctgcagctaaaggctttgttgctagttccttttacagtggc
ttgacagcaacagagttcttttttcatacaatgggaggtcgagaaggccttgtggataca
gctgtcaaaactgctgatacagggtacatgtctcgtaggttgtcaaaagttctagaggac
ctctctgttcagtatgataaaacagtgcgggccgcaaatggaggtattgttcagttttgt
tatggagatgacggtatggatcctgcaatgatggaagggaaaagtggagcgccgttagac
ttctaccggttgtttttcagagccaaggccacttgccctgctggagaaagcgaaagcctt
tctcctgatgaagtgtctgaaatagtgagaagcaggctttcggaacaagatatgactcct
gatggtggttgctctatgggttttaaaagttctatagagcaattcctggatgaatatgtt
aaagcattaagaaaaacacaggaggcttttttattgaatcaaagtcctggttgggaggtg
aagtctgcaactctacagaacatcgtccaaaatatatctggtgtcactcctagacagctg
aaggtttttctagatacttgtatttctcgttatcattcaaaaaaagttgatgctggtaca
gcaattggagtaattggagctcaaagtattggcgagcctgggacacagatgacattaaaa
acttttcactttgctggagttgcaagcatgaatgttacacttggagtccctcgtatcaag
gagataataaatggagcaaaaaatattcataccccaatcattactacagtactcgagtgt
gataataatccaatgattgcacggatggtggcaggtcggattgaaaaaacaaatttaggg
caggttgctgagtgtatagagattgtaatgagtccaagagcagcatatgtagaagtcaag
cttgatatggcggtgatacaagatgcacacttgtcaatagatgccaatgttgtaaaacaa
tcaattttgggaactccaaggattaaactgaaacatgagcacattagggttccagataat
caaacagttgaagttcattctcacgagaaggatagaagaaaacttcattttcacctctac
tatttgaagagtatactccccaatgttatagtacggggtataaagacaatcgaacgtgtt
gtcatcgatgaagaaaaagttaaaagggacaaaaaagatattgatattaaatgtggagac
gaaaagaagtacaagttgtttgctgaaggcaagggtcttctagcagtaatgagcactaaa
ggagtagatggttgtaaaaccacaagtaatgatattattgaagtgcagcagacacttgga
attgaagctgcaagaacttgtatcattgaggagataaagtatactatgaaatcacacgga
atgaacatagatgatcgccatatgatgcttttagcggatgtaatgacgttcagaggttta
gttcttggaatcacaagattcggcgttcaacagatgggcaaaagtgtattgatgctggct
tcatttgagcgaacagatgatcatctatttaatgcttccgttcaggggacagttgacaaa
attgaaggagtaagtgaaagcataatcatgggtataccaatgccgataggcaccggaatg
ttcaaaattaaacaacgcctccctgagatgtga
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