Fragaria vesca (woodland strawberry): 101314171
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Entry
101314171 CDS
T02666
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
fve04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101314171
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101314171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101314171
04121 Ubiquitin system [BR:
fve04121
]
101314171
03400 DNA repair and recombination proteins [BR:
fve03400
]
101314171
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101314171
Spliceosome [BR:
fve03041
]
Complex B
Other components
Prp19 complex
101314171
Complex C
Prp19-CDC5 complex
101314171
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
U-box type E3
101314171
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
101314171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_Vps41
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_HPS5
RMC1_N
zf-Nse
U-box
WD40_like
Beta-prop_VPS8
Beta-prop_ACSF4
PAS_11
PUMA_CC
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
101314171
NCBI-ProteinID:
XP_004296409
LinkDB
All DBs
Position
LG4:824897..831133
Genome browser
AA seq
523 aa
AA seq
DB search
MNCSISGEVPEEPVVSKKSGLLFEKRLIERHISEYGKCPVTGEALTADDIVPVKTGKIVR
PRPVQAASIPGMLGMFQNEWDSLMLSNFAMEKQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQADRQIPMSTPAAVVGNAPVHSNGTQVANDNLGPGVRNMHPGISPSILAE
LTDCNTALSQQRKKRQISSTLAPIDALERYTQISSHPLHKTSKPGILSIDIHHERDIIAT
GGVDTNAVIFDQPSGQILSTLGGHSKKVTSVKFVGRDNLVITGSADKTVRIWQGSDDGDY
HCNHTLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDITSGLCLTQVEDTSASQGYTSV
AFHPDGLILGAGTSEAVVKIWDVKSQTRVAKFDGHVGAVTSISFSENGYFLATAASDGVK
LWDLRKLKNFRTFTPYGPDTPTNSVEFDFSGSYLAAAGSDIRVIQATSVKQEWNTIKTFP
DMSGTGKATSVKFGPDAKYIAVGSMDRNLRIFGLPGKDVEMES
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatctccggtgaggtgccagaagagcccgtggtctctaagaagtccggc
ctgctcttcgagaagcgtttgatagagcgacacatctcggaatatggaaaatgcccagtc
accggcgaagcgctcactgctgatgatattgttccggttaaaaccggcaagatagtgagg
cccagacctgtacaagctgctagcatccctggcatgctcggaatgtttcagaatgaatgg
gatagtttgatgctgtccaattttgctatggagaaacaactacatacagcaaggcaagag
ttaagtcacgctttgtatcagcatgatgctgcttgccgtgttattgcaagactcaaaaag
gagagggacgaagcaagatcattacttgctcaggcagacagacaaattcccatgtcaacc
ccggccgctgttgtagggaacgctcctgtccatagcaatggaacacaagttgctaatgac
aatttgggacctggtgtgaggaatatgcaccctgggatatcccccagtatcctggctgag
ctgacagattgtaatacagcactatcacagcagcgaaagaagcgacagatatcctccact
ttggctcctattgatgctttggagaggtatactcagatatccagtcatcctctccataaa
acaagcaagccaggaattttgtcgattgatattcatcatgaaagggacatcattgcaact
ggaggggttgacacaaatgctgtaatctttgatcaaccgtctggccaaattttatctact
cttggtggtcattcaaagaaggttaccagcgttaaatttgtaggtcgtgataatctggtc
ataactgggtcggcagacaagacagttcgcatatggcaaggctctgatgatggagactac
cactgtaaccacactttgaaggatcatacagctgaggtgcaagctgttactgttcatgcc
acaaataactacttcgtgactgcatctcttgatagtacatggtgcttttacgatattacc
tctgggttatgtctgacacaggttgaggatacttcagcgtctcagggttacacatctgtg
gcctttcatcctgatggtctcatccttggagcaggtacctcagaggctgttgtcaagatc
tgggatgtcaaaagtcagacacgggttgcaaagtttgatggacatgttggggcagtaact
tccatctccttctctgaaaatggttactttctggcgactgctgctagtgatggtgttaaa
ctctgggatctgcgcaaattaaagaacttcaggacatttactccatatggtcctgatacg
ccaacaaactctgttgaatttgacttcagtgggagttaccttgcagctgctggctctgat
ataagagtcatccaagctactagtgtcaaacaagaatggaacactatcaaaactttccct
gatatgtctggcacaggtaaagcaactagcgtaaagtttggcccggatgccaaatatatt
gcagtaggatcaatggatcgaaatctacggatttttggcttgcctggcaaggatgttgag
atggagtcctga
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integrated database retrieval system
