Fragaria vesca (woodland strawberry): 101314182
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Entry
101314182 CDS
T02666
Name
(RefSeq) activating signal cointegrator 1 complex subunit 3
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101314182
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101314182
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
101314182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_19
DEXQc_Suv3
Helicase_PWI
T2SSE
Motif
Other DBs
NCBI-GeneID:
101314182
NCBI-ProteinID:
XP_004299306
LinkDB
All DBs
Position
LG5:7721412..7741246
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AA seq
2081 aa
AA seq
DB search
MLVQLPRLTSSLREPFDVDQAYLQRKLILQNQTKPRQSSSSVDESELARKIVHRWEEASY
ELRQAYKQFIGAVVELIDGEVQSEEFREVALAVYRLFGRPEEEGSVETNFSGKKQEVQML
LGHTVSDANMRKVASLAQELSGMQSSDHGITLVSETPVNGTHDSAEFGADLVFHPPARFF
VDVSLDDGESFCEETAGPSSYYEGSYGDGGLIGLHSATDGRGINLSWLQDACDQITKSST
QLSRDELAMAICRVLDSDKAGDEIAGDLLDLVGDSAFETVQDLISHRKELVDAIHHGLLV
MKSDKSSLTSQPRMPSYGTQVTVQTESERQIDKLRRKEEKRNRRGTEYGTDNDLAGVNFS
SLLQASERKNLFDDLSGLGEGLAVNALPQGTQRKHHKGYEEVLIPPTPGAQMKPGEKLID
IAELDDFAQAAFRGYKSLNRIQSRIYHTVYYTNENILVCAPTGAGKTNIAMISILHEIGQ
HFKDGFLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMTVRELTGDMQLSKNELEETQ
MIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQS
MIRIVGLSATLPNYLEVAQFLRVNPEAGLFYFDSSYRPVPLAQQYIGITETNYPAKLELL
NEICYKKVVESLRQGHQAMVFVHSRKDTAKTAQKLVELARKFEGLELFKNDQHPLFSLKQ
RDVVKSRNKDLVELFEFGLGIHNAGMLRSDRVLTERLFSDGLLKVLVCTATLAWGVNLPA
HTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLL
TSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIAWEEV
MADPSLSLKQRSLIADAARDLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNE
MLKRHMNETEVIDMVAHSSEFQNIVVREEEQNELEMLVRKLCPLEVKGGPSNKHGKISIL
IQVYISRGSIDTFSLVSDAQYISASLARIMRALFEICLRKGWSEMTLFMLEYCKAVDRQV
WPHQHPFRQFDRDISPQIIRNLEERGADLDRLYDMEEKEIGKLVNYGPGGRKVKQHLGYF
PWIQLAATVSPITRTVLKVDLLITPDFIWKDQFHGTAQRWWILVEDSENDHIYHSELFTL
TKRMAKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQAEAFYTISFHNLALPEAHTSHTE
LLDLKPLPVTSLGNSTYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAEL
AMLHLFNTQPDMKVIYIAPLKAIVRERMNDWRKRLVSQLGKKMVEMTGDYTPDLMAILSA
DIIISTPEKWDGISRNWHSRTYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTE
REVRFVGLSTALANAGDLADWLGVGETGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM
NKPSYAAICTHSPTKPVLIFVSSRRQTRLTALDIIQYAASDEHPRQFLSIPEEELQMVLY
QVADSNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVI
IKGTEFFDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPF
PVESSLREQLHNHINAEIVSGTICHKEDALHYLTWTYLFRRLMFNPAYYGLENTDAEVLS
SYLSSLVQNTLEDLEDSGCIKMSEDSVEPMMLGSIASQYYLSYLTVSMFGSNIGSDTSLE
VFLHILSAASEYDELPVRHNEENYNAVLSERVRCKVDKDRLDDPHVKANLLFQAHFSQLE
LPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSVTCMHLLQMVMQGLWFDEDSSLW
MLPCMNAELADSLCKRGIFRVQQLLELPKATLQNMIGNFPASKFFQDLQLFPRIEVKLKI
LWKEGGESCSLNIRLMKTNFRKHKSRAFTPRFPKVKNEAWWLVLGNTATSELYALKRVSF
SDHLVTNMELPSDSTTLQGMKLMVVSDSYLGFEQEHSISEL
NT seq
6246 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcagcttccgcgattgacaagctctctgagggagcccttcgacgtcgaccag
gcctatctgcagcgcaagctcatccttcaaaaccagaccaagcctcgccaatcatcgagc
tcagtcgatgagtcggagcttgcgcgaaagatagttcatagatgggaggaagcttcgtat
gagctgcggcaagcttacaagcagtttattggagctgtggtggagctgatagatggagaa
gttcaatccgaagagtttcgcgaggtggcactcgccgtgtaccggctttttggcaggcca
gaggaggaaggcagtgttgaaactaatttttctggaaaaaagcaggaagtgcaaatgctt
ttgggtcacacagtctcagatgccaacatgcggaaagttgcgtctctagctcaggaactt
tctgggatgcagtctagtgatcatgggattacacttgtttcagaaacgcccgtgaatgga
actcatgacagtgcagaatttggtgccgacctggtttttcatccaccagctcggtttttt
gtagatgtttctttggatgatggggagtcattttgtgaggaaacagctggaccctcctct
tactatgaaggatcatatggtgatggtggcttgatcggtcttcattctgctactgatggg
cgcggcatcaatctgagttggctacaagatgcatgtgatcagataacaaaaagttctaca
cagctttctcgagatgaactggcgatggccatatgtcgggtgcttgattctgacaaagct
ggtgacgagatagcaggtgacttgttggatcttgtgggggatagtgcgtttgaaaccgtt
caagacctcatatcacatcgaaaggaacttgttgatgcgatccatcatgggttactagta
atgaaatctgacaagtcttctttgacctcacaacctcgcatgcctagttatggcacacag
gtgactgttcaaacagaatctgaacggcagattgataagcttcggcgcaaagaggaaaag
cgaaatagacgaggcacagaatatggcactgataatgatctggctggtgttaatttttct
tctctactacaagcaagtgaaagaaaaaatctttttgatgatctatcggggctcggtgaa
ggactagctgttaatgctcttcctcaaggaactcagaggaagcaccataaggggtatgag
gaggttctaatccctccaacaccaggagcacaaatgaaacctggagaaaagctgattgat
atagcggagttagatgactttgctcaagctgcttttcgtggatacaaatctttgaaccgc
attcagagccgcatatatcatactgtttattatacaaatgagaatatactagtttgtgct
ccaacaggagctggcaagacaaacatagctatgatttccattctacacgagattggacag
cacttcaaagatggtttcttgcacaaagatgagtttaagatagtttatgttgcacctatg
aaggcgttagcagcagaagtcacatcaacttttagccaacgattatctccattgaatatg
actgtgagagaacttactggagatatgcaactttctaagaatgagcttgaagaaactcag
atgatagttacaacacctgagaaatgggatgtaattacacgcaagagcagtgacatgtca
ctttcaatgctggtgaagctcctaataattgatgaagttcatctattgaatgatgataga
ggccctgttattgaggcactagttgctcggactttacgccaggtggagtcttcacagtca
atgatacgcattgttggactatccgccactctacccaactatttggaggttgcacagttt
ctgagagtgaatccagaggcaggactcttctactttgattctagctaccgtccagtgccc
cttgcacagcagtacattggcattactgagacaaactatccagccaaacttgaattgttg
aatgagatatgctacaagaaggttgttgagtcactaaggcaaggtcatcaggcaatggtg
tttgtccattctcgaaaggacacggcaaaaacagctcagaagctggttgaacttgctcgc
aaatttgaaggactggagctctttaagaatgatcagcacccactgttttcattgaaacag
agggatgttgtcaaatccagaaacaaagatcttgttgaactttttgaattcggacttggg
attcataatgctgggatgttacgttctgatagagttctgactgagcgccttttctctgat
ggactattgaaggtacttgtttgtacagcaactttggcatggggagtaaatctaccagct
cacactgtggtgataaaggggacccaattatatgatccaaaggctggtgggtggcgagac
cttggaatgcttgatgttatgcagatatttggacgggctgggagacctcaattcgataaa
agcggtgaaggcattataatcacgtctcatgacaaactggcctactatctgcggttactg
acgagtcaacttcctattgaaagtcagttcattagttccttgaaggacaatttaaatgct
gaggtggcacttggtactgtcaccaatgtcaaggaagcttgtgcatggcttggatataca
tatctttttataagaatgaggcttaaccctttggcgtatggtatcgcgtgggaggaggta
atggcagatccttccttgagtttaaagcagagatcactcatagcagatgctgcgcgggat
cttgacaaagcaaaaatgatgcggtttgacgagaaaagcggaaatttttattgtacagag
cttggtcgcatagcaagccacttttatattcaatattctagtgttgaaacttacaatgaa
atgttgaagcgtcacatgaatgagactgaggtaattgacatggtagcccactcctcggaa
tttcagaatattgttgttcgagaagaggaacaaaatgagcttgagatgttggtgcggaaa
ttatgtccactagaagttaagggtggtccttcaaataaacatggaaagatttccattctc
attcaggtgtacatatctagaggctcaattgataccttttctttggtttctgatgctcaa
tatataagtgcaagcttggcacgtattatgcgggccttatttgagatttgtttgcgaaaa
ggctggagtgagatgacattgttcatgttggaatattgcaaagcagtggaccgccaagtt
tggccccatcaacatcctttcagacaatttgacagggatatctcaccacaaataatccga
aatcttgaggaacgaggggctgatcttgatcgcctatatgacatggaggaaaaagagatt
ggaaaactggtcaattatgggcctggaggaaggaaggttaagcaacatttgggatacttt
ccatggatccagttagctgcaaccgtaagtccaattaccagaactgttttaaaggtggac
ttgcttattacgccagacttcatatggaaagatcaatttcacggcactgcccagcgttgg
tggattctagttgaggattctgagaatgatcatatctaccactcagagctgttcactctg
acaaagcggatggctaaaggggaacctcagaagctctcgttcactgtaccaatatttgag
ccacatccaccacagtattatattcgtgctgtttctgattcttggttgcaagcagaggca
ttctacaccatttctttccataatttagcactcccagaggcccatacttcacatacagaa
ctgctagatctgaagcctctccctgtgacatctcttggaaacagtacttatgaagcattg
tacaaattctcacattttaatccgatacaaacacagactttccatgtgctgtatcacaca
gacaataatgtattactgggagctccaactggaagtggaaaaactatttctgccgagctt
gctatgcttcatctcttcaacacccagcctgatatgaaggtcatttacatagcacccttg
aaagctattgttcgagaaagaatgaatgattggaggaagcgccttgtctctcagcttggg
aagaaaatggttgaaatgacaggagattatactccagatttgatggccatcttgtcagca
gatatcataatatcaactcctgagaaatgggatggtatcagtcgtaattggcatagccga
acctatgttaaaaaggttgggcttatgattttggatgagattcacttgttgggagctgac
cgtgggcctatcctcgaggttattgtgtcaaggatgcgatacatatcctcacagacagag
cgtgaagtacggtttgtagggctttctacggctctggcaaatgcaggagatttggctgat
tggttgggtgtcggagaaactggactcttcaattttaaaccaagtgtgagacctgtaccc
cttgaagttcatatccagggatatccaggaaagttctattgtccaaggatgaatagcatg
aacaaaccatcgtatgctgctatatgcacccattcaccaacaaaaccggttctaattttt
gtttcatcacgtcgccagacaagacttactgcattggacatcattcagtatgcagcttcg
gatgaacatccaaggcagtttcttagtataccagaagaagagctccagatggttctttat
caggttgctgatagtaacctgaggcacaccttgcaatttggcattggattacaccatgct
ggtctgaatgacaaagatagatccctggttgaggagctttttgcaaacaacaagattcag
gtattggtttgtactagcacattggcatggggtgtaaaccttccagcgcatctggttatt
ataaagggaacagaattttttgatgggaaaacaaagagatatgttgacttcccaatcaca
gatatcttgcaaatgatgggtcgtgcaggtcgcccacaatttgatcaacacgggaaagct
gtcattcttgttcatgaacccaaaaagagcttctataaaaagtttttatatgaaccattt
cccgtcgagagtagtctgagggaacagctgcataatcacatcaatgcagagatagtttct
ggtacaatttgccataaagaggatgcattgcattatctgacatggacatatttattccgc
agactgatgtttaatcccgcttactatggcttggaaaatactgacgccgaagttttaagt
tcttatttgtctagcttagtgcagaacacattggaggatctggaagacagtggatgcatc
aagatgagtgaggacagtgtggagccaatgatgctgggttcgatagcatcccagtattac
cttagctacttgaccgtatcaatgtttggttcaaacattggctctgatacctcgcttgaa
gtattcttgcatatcctatctgctgcttctgaatatgatgaacttcctgttcgccataac
gaggaaaattacaatgcggtgctgtcagagagagttcgatgtaaagtggataaggatcga
ctagatgatccacatgtcaaagcaaatctgctgtttcaggcacatttctctcagctagaa
ttaccaattagtgactatgtcacagacttgaagtcagttttggatcaaagtatacggatt
atccaggctatgatagatatatgtgccaacagcggttggctttcaagttcagttacatgc
atgcatcttctgcagatggtcatgcagggcttatggtttgatgaggattcttctttatgg
atgttgccctgcatgaatgctgaacttgctgactcactctgcaaacgaggaatattccgt
gtacagcagctattggaacttcccaaggcaactttgcagaacatgattggaaacttccct
gcttcaaaattctttcaggatctgcagctgtttccacgaatcgaagtaaagttgaaaatt
ttatggaaagagggtggagaatcttgctctttaaacatcagattgatgaagaccaatttc
agaaaacataaatcaagagcctttactccacgcttccctaaggtgaaaaatgaagcatgg
tggttggtgcttgggaacaccgcaacgtcggaactatatgctctgaagagagtatctttc
tctgatcacttggttactaacatggagttaccatcagattcaaccactctccaggggatg
aaactgatggtagtatcagattcttatctggggttcgaacaagagcattcaatatcagaa
ctttaa
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integrated database retrieval system
