Fragaria vesca (woodland strawberry): 101314555
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Entry
101314555 CDS
T02666
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101314555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101314555
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101314555
Spliceosome [BR:
fve03041
]
Complex C
Other components
Step II factors
101314555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
ABC_tran
AAA_16
TsaE
Sigma54_activ_2
PhoH
DUF1192
T2SSE
Motif
Other DBs
NCBI-GeneID:
101314555
NCBI-ProteinID:
XP_004296476
LinkDB
All DBs
Position
LG4:3757518..3764156
Genome browser
AA seq
1189 aa
AA seq
DB search
MAVIDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRNCGSVDEFDAKLKENG
AEMPDYFVRTLLTIIHAILPPKPKSEDDSMIESNTEGKKTKFKALSIADNRDRINDLQKE
IEMETKEKKKDREEWGDELEEDRRRGRGRDRDRYGERERDRDRDSDRRERGRDMYDRGER
RRDTHHDYDKGSHTDRSNKPRRDGYEEDVDGRQGSGNRRGGGDQRSGHNSDEPELYQVYK
GRVSKVMDTGCFVQFSDFRGKEGLVHVSQMATRRIGNAKDVVKRDQEVYVKVISVSGQKL
SLSMRDVDQHTGKDLLPLKKSSEDDALRTNPAVSKDERPVTRTGLSGIRIVEENTGVSSR
RPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDEETEGMLYEEEGAEEELEIELNEDEPAF
LQGQSRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRP
WEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTVSFGQRSKLSLQEQRQSLPIYK
LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAATSVAKR
VAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILIDENLSQYSVVMLDEAHE
RTIHTDVLFGLLKKLIKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYT
KQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFSCQSLFERMKGLGKNVPELII
LPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ
GLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSVPEIQRINLGLTT
LTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPIDPPL
SKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVY
KAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTQIRKAITA
GFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWIIYHELVMTTKEYMREVTVVD
PKWLVELAPRFFKVADPTKMSKRKRQERVEPLYDRYHEPNSWRLSKRRA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcattgacgatggtttgaagaagctcgagtacctttccttggtttctaaagtc
tgttcagagctggaaacacatctaggctttggggataaagttttagctgagttcataact
gagatgggacgaaactgtgggagtgtggatgaatttgatgccaaattaaaggaaaatggt
gctgagatgcctgattattttgtccgcacactcctcactatcattcacgcaattcttcct
ccaaagccaaagtctgaggatgactcgatgatagagagtaatactgaaggtaagaagacc
aagttcaaggctttgtctattgctgataacagggataggataaatgatctccagaaggaa
attgagatggagaccaaagaaaagaaaaaagaccgagaagagtggggtgatgagcttgaa
gaagataggcgtagaggtagaggtagagatagagacagatatggggaaagagaacgagac
agagatagggatagcgatagaagagagaggggcagggatatgtatgacagaggtgagagg
cgtagggatactcatcatgattatgataagggaagtcataccgaccgatccaataagccc
aggagggatgggtatgaagaggatgtagatggtagacaaggtagtggtaacagaagagga
ggtggggatcagcggagtggtcacaattctgatgagcccgaattgtatcaggtttataag
ggtagggtatcaaaagtcatggacacgggttgctttgttcagtttagtgactttagggga
aaggagggtttggttcatgtttcacaaatggcaactcggcgtattggtaacgctaaagat
gtggtgaagagggatcaagaggtctatgttaaggtgatttcggtttctggtcagaaattg
agcctttcaatgagggatgttgatcagcataccggaaaggatttgcttccattgaagaag
agctcagaggatgatgctcttaggacgaaccctgcggtatcaaaggatgaaaggcctgtg
acaaggactggtctttctgggattagaattgtggaagagaacactggtgtctcttctcgt
cggccattaaagagaatgagctcgccggagaagtgggaagccaaacagttgattgcctca
ggtgttttgggtgttacagaatatccaatgtatgatgaggaaacagaggggatgctttat
gaagaagagggcgctgaggaagaacttgagattgagcttaatgaagacgagccagccttt
ttgcaagggcaaagcaggtattctgtagatatgtcacctgtgaaaatctttaagaatcca
gaggggtccttaagccgtgctgcggcactccaatctgcacttattaaagagcgcagagaa
gtgcgtgagcagcagcaaagaaccatgttggattcaatcccaaaggatctgaatcgtcct
tgggaagatccaatgccagagactggtgagaggcatcttgcgcaggagcttagaggtgtt
ggtttgtcagcctatgacatgcctgagtggaagaaggatgcttttgggaagactgtcagt
tttgggcagagatcaaagctctcacttcaggaacagaggcagagcttacccatctacaag
ctcaagaaagaattggttcaggcagtgcatgataatcaagttcttgttgtcattggtgag
actggttcgggaaagacaacccaggtaacacaatatcttgcagaagcaggttacacgaca
atgggtaagatcgggtgtacacaaccacgtagggtggctgcaacatctgtagccaagaga
gtggctgaagaatttggttgtcgtttgggggaggaagttggctatgctattcgttttgag
gattgcactggccctgaaaccgtcatcaagtacatgactgatggtatgcttcttagggag
attttgattgatgagaatctctctcagtattctgtggtcatgcttgatgaagctcatgag
aggacaatccatacagatgttctgtttggattattgaagaaacttatcaagcggagacca
gacctacgtttgatcgtcacatctgctaccttagatgctgagaagttttcaggttatttc
ttcgactgtaacatcttcactataccgggtagaactttccctgtagagatactctacaca
aagcagccagaaagtgattatcttgatgcctctctaatcactgttctacagattcacttg
acggaaccagaaggggacatccttctcttcttgacaggacaggaagaaattgatttctca
tgccagtcactttttgagaggatgaaaggtctaggtaaaaatgtgcctgagttaattatc
ttaccagtttatagtgcccttcctagtgaaatgcagtccaggatatttgatccagctcca
cctgggaagaggaaagtagttgtggctactaatattgccgaggcatcactaaccatcgat
gggatattttatgtaattgatcctggatttgcaaagcaaaatgtttataacccaaagcag
gggctggattcactggtcataaccccaatttcacaagcatcagccaagcaaagggctggg
cgtgctgggcgtactgggcctgggaaatgttaccgcctctacactgagagtgcataccgc
aatgagatgtcccccacttcagttccagaaattcagaggataaatcttgggttaactacg
cttaccatgaaagcaatggggatcaatgatctgctttcttttgattttatggatcctcca
tcaccccaagcacttatttctgctatggaacaactgtacagtttaggagcactcgatgag
gaggggcttctcaccaaactgggtaggaaaatggctgagtttcctattgatccgccacta
tctaagatgctactggccagtgtggaccttggatgcagtgatgagatcttgaccatgatt
gccatgattcaaacaggcaatatattttataggcctagggagaaacaagcccaggctgat
cagaagagagccaaatttttccagccagagggagaccatctgactttacttgcagtgtat
aaggcttggaaagctaagaacttttccgggccatggtgttttgagaacttcgttcagtct
cggtcccttaggagagctcaggatgtcagaaaacagcttctaagcatcatggataagtat
aagctggatgttgtgagtgctggaaagaattttacacagatcaggaaggcaattacagca
ggatttttcttccatggtgctagaaaggaccctcaggaggggtatagaaccttagtggag
aaccagccagtttatatccatccaagcagtgcgctttttcagagacagccagattggatc
atctaccatgagttggttatgactacgaaggagtatatgcgtgaggtaacagttgttgat
cccaaatggcttgtggaactagcacccaggttcttcaaagtggcagaccctactaagatg
agtaagcgtaagcgtcaagagcgtgttgaaccgctatatgacagataccatgaaccgaac
tcttggcgtcttagtaaacgacgtgcatga
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