Fragaria vesca (woodland strawberry): 101314655
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Entry
101314655 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101314655
03009 Ribosome biogenesis [BR:
fve03009
]
101314655
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101314655
Spliceosome [BR:
fve03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101314655
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
90S particles
Helicases
101314655
Pre-60S particles
101314655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
SNF2-rel_dom
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
101314655
NCBI-ProteinID:
XP_004298245
LinkDB
All DBs
Position
LG4:complement(14807549..14813351)
Genome browser
AA seq
673 aa
AA seq
DB search
MLGKAPAPVVNHLWPKRIDPEWIVAQHHCRCTLHPHQIRKWGISCSLGQKAKDKSAAAYD
LMDDFIVLGANTKNNDSSLVHDSPKTNTTQRDNDRQQGAPPRRIARGAGNFGRLKVQRVK
AVVEKASRVRRDMNESDNELDVQDASPFLSRIEGMGKNKKANAVSRGGRVSNPSNSHEFR
DALRKKEPADYEENSRVTTKDFFEPLPESRHKPYVRHKPNTIVDRRRVSVSRKGWGSGGS
ARESSEYPDLDQRRRVTNDGGFFSRKSFRDVGCSEYMIECLRKQLFQRPSHIQAMAFAPV
LAGKSSIIADQSGSGKTLAYLAPVIQRLREEELQGLSKSSSQSPRLVVLVPTAELASQVL
SNCRSISKSGVPVRSMVVTGGHRQKTQLESLQEGVDVLIATPGRFIYLIKEGFLHLSSLR
CAVLDEVDILFNDEDFEAALQSLMNSAPVTTQYLFVTATLPLGIYNKLVEDFPDCQVVMA
PGMHRISPGLEEVLVDCSGDDRSEKSPEMAFTNKKSALLQLVEGSPVPKTIVFCNKIETC
RKVENVLSRFDRSGTRVQVLPFHSALAQESRLANMKEFTSSRSEKVAQFLVCTDRASRGI
DFPGVDHVILFDFPRDPSEYVRRVGRTARGAGGVGKAFIFVVGKQVSLARRIMDRNQKGH
PVHDVPAAYELLY
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcaaagctcctgcaccagtagtgaaccacctatggccaaaacgcattgaccca
gaatggattgtggcacagcaccactgcaggtgtactctccacccacatcagattaggaaa
tggggaataagttgtagtcttggtcagaaagcaaaggataagtctgcagctgcttatgac
ctcatggatgatttcattgtgttgggagctaataccaagaataatgactcttctctggtc
catgactctcccaaaaccaataccactcaaagagataatgatcgtcaacagggggcacct
ccgaggagaattgccagaggtgctggaaatttcggaagattgaaagtccagagagtgaaa
gctgtagtggagaaagcttctcgggtgaggcgagacatgaatgaaagtgacaatgaacta
gatgttcaggatgcatcaccatttctctctagaattgaaggtatggggaagaataagaaa
gcaaatgccgtgagtcgtggagggagagtttcaaatccttccaactcacatgaatttagg
gacgcattgcgtaagaaggaaccggcagattacgaggaaaattctagagtaactacaaaa
gatttttttgagccactccctgagagtaggcataaaccttatgtgcgtcataagcctaat
accattgtcgacagaagaagggtttcagtttcaagaaaaggatggggtagtggagggtct
gcacgtgaatcatcagagtatccagacctagatcaaagaaggagagtgaccaatgatggt
ggcttttttagtcgaaaatcctttagggatgtcggatgcagtgagtatatgatcgaatgt
ctgaggaagcagcttttccagcgcccatcacatattcaggccatggcgtttgctccagtt
cttgctggaaaaagctcaattattgctgaccaaagtggatctggcaagacattagcttat
cttgctcctgtaattcagcgtttacgggaagaagaacttcaaggactgagcaagtcctca
tcacagagtcctcgattagttgtattagttccgactgctgaattggcttctcaggttttg
agtaattgccgatcaatctcaaaatctggagttcctgtcaggtctatggttgtaacaggc
ggtcatcgacaaaaaactcagcttgaaagtttacaagaaggtgttgatgttctaattgca
acacctggtcgatttatatatctaattaaggagggtttcttgcatttgtcaagtctgaga
tgtgctgttctggatgaggtagatattctctttaatgatgaagattttgaagcagcactg
caaagtttgatgaattctgcacctgttaccacacaatatctttttgtgactgcaacttta
ccacttggcatttacaacaaattagttgaagattttcctgattgtcaagtggtcatggca
cctggaatgcaccggataagccctggccttgaagaggtgcttgtagattgcagtggagat
gatcggagtgaaaaatctccagagatggcattcacaaacaagaaatctgctcttctgcag
cttgtggagggaagtccagtacccaaaacaatagtgttttgtaacaagattgagacatgc
agaaaggttgagaatgtattatcacgcttcgacagaagtggaactcgtgttcaagttctg
ccatttcattctgctctggctcaagaatcacggcttgcaaacatgaaggagttcactagt
tctcgttcagagaaagtagcacagtttttggtctgcaccgatagggcatcacgaggaatc
gactttcctggtgtggatcatgttatactcttcgacttcccacgtgatccaagtgagtac
gtgcggcgtgttggaagaactgccaggggtgctggaggagtgggcaaggcattcatcttt
gtcgttggcaagcaagtctctcttgcacgaagaataatggacaggaaccaaaaaggccac
ccagtgcatgatgtaccagctgcatatgagcttttgtattaa
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