Fragaria vesca (woodland strawberry): 101315225
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Entry
101315225 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101315225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101315225
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101315225
Spliceosome [BR:
fve03041
]
Complex A
U2 snRNP components
U2 related factors
101315225
Complex B
101315225
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
101315225
NCBI-ProteinID:
XP_011462590
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All DBs
Position
LG4:7938452..7942281
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AA seq
951 aa
AA seq
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MEERRYKYRKEVASDRSRYCEKQRDKDRSRRNGESRRFEREKNCDDEDRSCWERERARKK
KRDREREIEVENQRGEREERKRDINQRKRERSKDVDCDDFVDEDVREHDTKRRRRDVGGA
RPRKNSEEENKATRREELEDEDEMEKRRRRVQQWHERVKGEAHGDKCMEGNVDELKSAET
WTLSDDDNKELRGDSMLVGSENVRAATEPAWQNGDDATGDEELDPLDAYMNLVVLPQVNG
TDNKDRTDTKPRRIPNKSIGRILPGEDSDSDYGDLENDDVSLANDNIMKPEKFSQVDHSK
IHYQPFRRNFYIEVKDISRMSAEEVSTYRNQLELKINGKDVPKPIKTWPQTGLTTKTLEV
IKKLNFEKSLPIQAQALPVIMSGRDCIGIGKTGSGKTLAYVLPMLRHIKDQAPAVSGDGP
VGLIMAPTRELVQQIHSDIKKFSKVLGLRCVPVYGGDDVAQKIGELKHGADIVVCTPGRM
IDLLSKNGGKITNLHRVTYLVLDEADRMFDCGFEPQISQIVQDIRPDRQTVLFSATFPHQ
VELLARKVFRVQDKPVHIQVGGRSVVNKDIMQIVEVRPKDERFLRLLELLGQWYEKGKIL
IFVQTHDQCDTLFTDLLKHGYPCLSLHAGKDQTDRQSTISDFKSNVCNVLVATSVAARGL
DVKELEVVINFDVPNHYEDYVHRVGRTGRAGRKGCAISFISVEDERYAPDLVKAXXLSGQ
VVPEDLKSLASNFMEKVNQGLERAHGTGYGGSGFKFNEEEDEMRKAAKKAQAKEYVCEDD
VSDLEDGDDGIQQEGDDISPQGALTHIQAITKIPVVGNDGTARALAFANDLNLLHNLAKM
KGMPEHYAELEINDFPQTARWKITRNETRQYISELTKAAITPKGQYFPPGKVQGPGDRKL
YLCIEGPTEQSVKNAIAELKCALEDTANQTFSLPDRAGQGRYQIIQVSVIT
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcggagatataaatataggaaggaagtagcatctgataggagtcggtattgc
gaaaagcagagggacaaagatagaagtaggagaaacggtgagagtcgacgttttgagaga
gagaagaattgtgatgatgaggacaggtcttgttgggagagggagagagctagaaagaag
aaaagggacagggaacgagaaatagaggtagaaaatcaaaggggggagagggaggagagg
aaaagggacataaaccaaaggaagagagagaggagtaaggatgtcgattgtgatgatttc
gttgatgaggatgttagggagcatgatacgaagcggcgtaggagagatgttggtggtgcg
aggcctagaaagaatagtgaagaagagaacaaggcaacacgccgagaggagttagaggat
gaagatgaaatggagaagcggaggcggagagtgcagcagtggcatgagcgagtaaaggga
gaagctcatggcgacaagtgtatggaagggaatgttgatgaactcaagtctgcagagacc
tggactctatctgatgatgataataaagaattacgaggtgattccatgttggtaggttct
gagaatgtaagagctgcaactgagcctgcttggcagaatggagatgatgctactggggat
gaggaacttgatccgttagatgcctatatgaatcttgtggttttgcctcaggttaatggt
actgacaataaagatagaacagacacaaagccaaggagaattccaaataagtcaataggc
agaatacttcctggggaggattccgattcggattacggggaccttgagaatgatgatgtt
tccttagcaaatgacaacatcatgaaacctgagaaattttctcaagttgaccactcaaag
atacattatcaaccatttcgtagaaatttttatatagaagtgaaggatatctcacggatg
agtgcagaagaggtgtctacataccggaatcaattggaattgaagataaatggcaaagat
gtgccaaagcccatcaagacctggccccaaactggactaacaactaaaacattggaagta
ataaagaagctcaactttgaaaagtccttgccaattcaggctcaggcattgcctgtaatt
atgagtggtcgagactgcattggcattggaaaaactggatcaggcaaaacccttgcatat
gtgctgccaatgctgaggcatatcaaggaccaggcacctgctgtatctggagatggacct
gttgggcttataatggctcccacgagagagcttgttcagcagattcacagtgacattaag
aagttttccaaggtactgggtctcaggtgtgtgcctgtgtatggaggtgacgatgttgcg
caaaaaatcggtgaattgaagcatggtgcagacattgttgtctgtactcctggtaggatg
attgacctactttccaaaaatggagggaaaattactaacttgcatagagtaacctatctg
gttctggatgaggctgatcgaatgtttgactgtggttttgaacctcaaatcagccaaatt
gttcaagatattcgcccagatcgtcagactgttttattctctgctactttccctcaccag
gttgagcttttggcgcgcaaagtcttccgcgttcaagataaacctgtgcatatacaagtt
ggcggcaggagtgttgtgaacaaggacataatgcaaatagttgaagtaaggccgaaagat
gaaagatttttgaggttgttagagctacttggtcaatggtatgaaaaaggaaaaattttg
atatttgtacagacccatgaccagtgtgatacattgtttacggatttgcttaagcatggg
tatccttgtctctcacttcatgcgggaaaagatcagacagatcgccagtccactatatct
gattttaagagcaatgtttgtaacgtgttggttgcaacaagtgttgctgccagagggtta
gatgtgaaggagcttgaggtggttatcaattttgatgttccgaatcactatgaggactat
gttcaccgtgttggtcgtactggccgagctgggcgtaaaggctgtgctatatcatttatc
tctgtggaagatgagaggtatgctcccgatctggtcaaagcatagtagctgtcggggcaa
gttgttccagaggacctgaaatcacttgctagtaattttatggaaaaagtgaaccaggga
cttgagcgtgcacacgggactggttatgggggaagtggtttcaaatttaatgaagaggaa
gatgaaatgaggaaagcagcgaagaaagcacaggcaaaagaatatgtttgcgaggatgac
gtgtcagacttagaagatggagatgatggtatccaacaagaaggggacgatatctcaccg
caaggtgcccttactcatatacaagccattactaaaatccctgttgttggaaatgatggc
acagctcgagcattagcatttgcaaatgatttgaacttgctgcataacctggcaaagatg
aaaggaatgccagaacactatgcagagttggagataaatgattttcctcagactgctaga
tggaagattactcgtaatgaaactcgtcaatatatttcagaattgactaaagctgccatt
acacccaaggggcagtatttcccaccaggcaaggttcaaggaccaggagatcgcaagctc
tacttatgtatcgagggtcctactgaacagtctgtcaagaatgctatagcagaattaaaa
tgtgcattggaagatacagcaaaccagacattctcacttcctgacagagctgggcaaggc
agataccaaatcatacaagtaagtgtaataacttaa
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