Fragaria vesca (woodland strawberry): 101315325
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Entry
101315325 CDS
T02666
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve00040
Pentose and glucuronate interconversions
fve01100
Metabolic pathways
Module
fve_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101315325
Enzymes [BR:
fve01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
101315325
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
Phage_Coat_B
Motif
Other DBs
NCBI-GeneID:
101315325
NCBI-ProteinID:
XP_004296118
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Position
LG3:22527021..22528456
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AA seq
444 aa
AA seq
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MGLKLMNILTILVLSWFASATTSQADVFDVTSSIYGGKPGYDIAEGLANAWRDACSSESA
SKVVVPSGTYKLKEAIFEGPCKAPIEVHIQGTLQAPKDPSSDVWVTFSLINMLTLSGGGT
FDGQGAHGSKRSDFRDIKFSSITNSIVKNITSLNSKKFHISVTECTNVVFDHLTITSPTD
DANTDGIDIGSSKGINVTHTNIATGDDCIAVSEGTNQLLVTGVTCGPGHGISIGSLGQKP
DEQPVVGVTVMNCTLVGTTNGARIKTWPDSPGASTASDIVFEDIVMVNVENPIIIDQNYC
SGEDDDRCKQNIPSTVQIRNVRFKNIRGSSATPIAVNLACSPSVPCQNVELEDVDLTYSG
DEGSLSSQCINVRPRITRVTEALACANVPGLPSDNSPPPPLYDYQSPMIYTGALDNSSCS
WPRASVMVYLLISGLGVRLLQRLL
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgaaattgatgaatatcctgacgatacttgtgctctcatggtttgcatctgca
actacatcccaagctgatgtgtttgatgtgactagttcaatatatggcggaaagcccggc
tatgatattgcagagggtttggcaaatgcatggagagatgcatgttcatcagagtcggca
agtaaggttgttgttccgagcggtacgtacaagttgaaagaagcaatatttgaaggtcct
tgcaaggctccgattgaggttcacatccaaggaacactgcaggctccgaaagacccaagt
tcagatgtttgggtgacttttagcttgattaacatgctcacactatccggcggtggaacc
ttcgacggccaaggagcacatggttcaaaacgcagtgatttcagggacattaaattctcc
tccatcaccaattccatagtcaagaacataacttcactcaacagcaagaaattccacatt
agtgttaccgagtgcaccaatgttgtgttcgaccaccttacgattacatcacctacagac
gatgctaacactgatggaatcgacattgggagttcgaaagggatcaatgtcactcacaca
aacattgcaacaggagatgattgtattgccgttagtgagggcaccaaccagctcctagtg
actggcgttacttgcggaccaggccacggcataagcataggaagtcttggacagaagcct
gatgaacaacctgttgtcggagtcacagtcatgaactgcacccttgttggcacaaccaat
ggtgcgagaataaagacatggcctgattctcctggtgcaagtaccgcctccgatatagtc
tttgaggatattgtaatggtaaatgtcgagaatcctatcatcattgatcaaaactactgc
tcaggagaagatgatgatagatgcaaacagaatattccatcgacagttcagatcagaaat
gtgagattcaagaacattagaggctcgtctgcaactccaattgctgtaaaccttgcatgt
agtcctagtgtgccatgccagaatgtggaactagaagatgttgatctcacatacagtggc
gacgaaggctccctctcatctcaatgtatcaatgtcaggcctagaattactcgcgtcaca
gaagctcttgcttgtgctaatgtgccaggcttaccatcggataattcacctcctccaccg
ttatacgattatcaatcacctatgatatacactggcgcactagacaatagcagttgttcg
tggccaagagcatcggtcatggtgtatctgctaatttcaggtctgggtgtgagactgttg
caacggttgctgtag
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