Fragaria vesca (woodland strawberry): 101315454
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Entry
101315454 CDS
T02666
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve00040
Pentose and glucuronate interconversions
fve01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101315454
Enzymes [BR:
fve01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101315454
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
101315454
NCBI-ProteinID:
XP_004304685
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Position
LG6:complement(37866551..37868036)
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AA seq
399 aa
AA seq
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MSVLFLASFLIATTSVSCSQLQDPEVVVQEVHRNISASRRQLAHSSCGNGNPIDDCWRCD
PNWEQNRQRLADCAIGFGKDAIGGRNGRIYVVSDSGDDDPVNPRPGTIRHAVIQDEPLWI
IFKRDMVIQLKQELVMNSFKTIDGRGASVHIANGPCITIHHVTNIIIHGIHIHDCKQAGN
GDIRDSPSHAGWWTQSDGDGVSIFGGKHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYM
THHDKVMLLGHSDSFTEDKGMHVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYA
IGGSAAPTIYSQGNRFLAPDRRFDKEVTKHEDAPESKWRKWNWRSEGDLMLNGAFFRQSG
AGSWSSYARASSLSGRPSSLVGSMTVTAGALNCRRGSRC
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttctttttctcgcttctttcctaattgcaactacttctgtttcctgctctcaa
cttcaagaccctgaagtagtagtgcaggaggtccataggaatatcagtgcgtctaggagg
cagttggcccattcctcgtgtggaaatggcaaccccatagacgactgctggcggtgcgac
cccaattgggagcaaaaccgccagcgccttgctgattgcgctattggcttcggcaaggac
gcaattggcgggagaaacggccgaatctacgtagtatctgactccggcgacgacgaccct
gtgaaccctaggcccggaaccatccgacacgccgtgatacaggacgagccgctgtggatc
attttcaagagggacatggtgatccagctgaagcaagagctggtcatgaactcgttcaag
accatagacggtagaggtgcaagtgttcacattgctaatggaccatgcatcaccatacat
cacgtcaccaacatcatcatccatggaatccacatacacgactgtaagcaggccgggaac
ggggacattagggactccccgagccacgcagggtggtggacgcagtccgacggtgacggt
gtgtcgattttcggcgggaagcacgtttgggtcgatcactgctcgctgtcgaattgtcac
gatggactcatcgatgccatacacggatccacggccatcacgatttcgaacaactacatg
acgcatcatgacaaggttatgcttttagggcacagtgattcgtttacggaagacaagggc
atgcatgttactattgcgttcaatcactttggagaagggctcgtgcaaagaatgccaagg
tgtagacttggatattttcatgtggtgaacaatgactatacacattgggagatgtatgct
ataggagggagtgctgccccgaccatctatagtcaaggcaatagatttcttgcaccggat
cgacgtttcgataaagaggtgacaaaacacgaggatgcaccggaaagtaaatggaggaaa
tggaactggagatccgagggggatttgatgctgaacggcgcatttttcaggcaatcaggt
gcgggttcatggtcaagctatgcgagggcgtccagtctcagtggaagaccttcttctctt
gtgggttcgatgactgtcactgccggtgcacttaactgccggagaggatcccgctgctag
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