Fragaria vesca (woodland strawberry): 105350271
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Entry
105350271 CDS
T02666
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105350271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
105350271
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
105350271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DUF1258
Motif
Other DBs
NCBI-GeneID:
105350271
NCBI-ProteinID:
XP_011460252
LinkDB
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Position
LG3
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AA seq
489 aa
AA seq
DB search
MSTDLLLKPSCEVRGCGSTSDLYGSNCKHMTLCISCGKTMAENKAKCSQCDAIVTRLIRE
YNVRRESTIGDKNYFIGKFGTGLPSFLKTKNPSQNKWSLRKDLQDSRKNKNEVKSKAWIL
DEQRGQSRYQGHQECAQSSSYYLLMKAGKEFSAVPAGSWFNFNKVAQYKQLTLEEAEEKM
NNRQKTNRDGYKRWIMKLGNGPEKVTGENDGSGEGKFSNNEEEETRKGDGFDEEGDIGGA
SEDGDLHDDGSDKGSDWEHEEIFSDDDEAVGNPDEREDLEHEAPSPPESKHDEDGNEEQV
RLSESGRELKKLLGRSGGLNGIDGEEEEDEDDDDEDDMDEDIGLLPPAPKQKVAPKQLEG
FFNSHTKPVPKEKRKLDGDEANKQASNTASKKMKTENEQNSHVRDNAAASMHPQASPSMK
IGSASSPVSEDQIRALLMKKAPIPLSDFVNNFPERRKYSKEEKDAFSKIMKKVSTLQNKN
GISYLLLKK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccgatttgttgctaaagccgtcgtgcgaagtccggggatgtggatcgacttct
gacttgtatggaagcaactgtaagcacatgactctgtgcatctcatgcggcaagaccatg
gcagagaacaaagccaaatgctctcaatgcgacgccattgtcactcgcttaattcgagag
tacaatgttcggcgggaaagtactatcggtgacaagaactacttcattggcaaattcggg
acgggtttgccaagctttttgaaaacgaagaatccttctcagaataaatggtctcttcgt
aaggatcttcaagactcgaggaagaacaagaatgaggtgaaatctaaagcatggatattg
gatgaacaaaggggccagtctcggtatcagggtcatcaagaatgtgcacagtcatcaagt
tactacctactaatgaaggcagggaaggagttttcggctgttccggctggttcttggttc
aacttcaacaaggttgcacaatataagcaactaactctagaggaagcggaggagaagatg
aacaataggcaaaagactaatcgagatggatataaaagatggattatgaaacttggaaac
ggacctgaaaaagttactggtgagaatgatggtagtggtgaaggaaagttctccaataat
gaggaagaagagacaaggaaaggagatggttttgatgaggagggtgatattggaggtgct
agtgaagatggggacttgcatgatgatggtagtgacaagggtagtgattgggagcatgaa
gaaattttcagtgatgatgatgaggctgtaggtaatcctgatgaaagagaagatttggaa
catgaggctccatctcctccggaaagcaagcacgatgaagatggtaatgaagaacaggtc
aggctgagcgaatcggggagagagttgaagaagctacttgggagaagtggtggcctgaat
ggtattgatggagaggaagaggaagatgaagacgacgatgatgaggatgatatggacgag
gacattggcttattgcctccggcaccaaagcagaaggttgcacccaaacagctggaagga
tttttcaacagtcacacaaaaccagttccgaaggaaaagagaaaattagatggtgatgag
gctaataagcaggcatctaacactgcatcgaagaagatgaagaccgaaaatgaacaaaac
tcacatgtgagagataatgcagctgcttctatgcatccacaagcttctccatccatgaaa
attggttctgctagtagtccggtatctgaggaccaaattagggctctgttgatgaagaag
gcaccaatccctttgtctgactttgttaacaacttcccagaaagacgaaaatattccaaa
gaggagaaggacgctttttcaaaaataatgaagaaagtatctacgctgcagaataagaac
gggatcagctatcttttattgaagaagtaa
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