Frieseomelitta varia: 122527054
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Entry
122527054 CDS
T09482
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03013
Nucleocytoplasmic transport
fvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122527054
03015 mRNA surveillance pathway
122527054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122527054
Enzymes [BR:
fvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122527054
5.6.2.5 RNA 5'-3' helicase
122527054
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122527054
mRNA cycle factors
Common to processing body (P body) and stress granule
122527054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
122527054
NCBI-ProteinID:
XP_043506795
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDSAQSQPSQ
PVQVNGTSGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacgggcccagcagccagaccctgacgttcctcgacaccgaggag
gcggacttgatcggcgcggacacgcagggtagcgaattcgacttcaccgacttcacgttg
ccatcgccaagccagacccaggcatcgcagcatgactctgcccagagccagcctagccag
cctgtgcaggttaatgggacaagcggcagttcatctctggacttgaagatatctggtgct
gcgcagagccttgcggaattacagtttgaggaagaggaagaagaggcgtactacaatcgt
gacctgccagagcatgcatgtaaatattgtggcattcatgaagcgtcttgcgttgttatg
tgcaatgtctgccgcaagtggttctgcaacggacgtggaaacacatctggttctcatatt
atcaatcatcttgtcagagccaaacacaaggaagtgactttacatagagatggacctttg
ggagagactgtcctcgagtgttactcttgcgccgttaggaacgtttttgttctcggtttc
attcctgcgaaagcagactccgtcgttgtgttactttgccgccaaccgtgcgcggcacaa
agttcgttgaaggacatgaactgggatcaagagcagtggaaaccattgatagaggatcgg
tcctttttagcttggttagtaaaaatcccgtcggagcaggaacagctgcgcgccagacag
atttcggcccaacagatcaacaagctggaggaactgtggcgcgacaatgtcgatgcaacc
tttcaggatcttgagaagcccggtgtcgacgaagaaccgcaacaggtactcttgcggtac
gaggacggataccaataccagaatatattcggccctctcgtgaagctggaagccgactat
gacaagcgtctgaaggaatcccaaacgcaagagaacattgaggtgcgctgggacgttggg
ctgaataaaaagacgatcgcttatttcatgctggcgaaaacggacggcgacatgaaactg
atgcacggggacgagctgaggcttcgttatctgggcgagcttcacaaaccttggtcaggg
attggacacgtgattaagatccccgataattacggggaggaggtcgggatcgaattgaag
aacaattctggcgcaccgacggaatgcgtcagtaactttgtcgttgatttcatttggaaa
agtaccagctttgatcgcatgcagttagcgttgcgaaagtttgctgtggacgacacttcc
gtgtccggttacatatatcacagattgttgggccacgaggtggaagaagtcctgttccgc
tgccatcttcccaaacacttcagcgccccgaacttaccggatttgaatcgttctcaagtg
tacgctgtgaaacacgccgtgcaaaggcccttgtccctgatccaaggaccacctggcaca
ggaaagaccgtgaccagcgcgacaatagtctaccagctagtgaagcaaaacggtggccca
gtgttggtgtgcgctccctcgaacacagcggtagaccaactgaccgagaagatacacaag
tccaacttgaaggtggtgagactgtgcgcgaagtcgcgcgaggctatcgactcgcccgtc
agcttcctcgcgcttcataatcagatcaagaacatggagacgaacaccgagctgcagaaa
ctgcagcagttgaaggacgaaaccggagagttgtccagcgtcgacgagaaacgttacaga
ctgttgaagaaagcggcggagaaggaactgttggaggcagccgatgtgatttgctgcacc
tgtgtcggtgctggcgacccgaggctgcacaggctcaagttccactcgattctcattgac
gagagcatgcaggcaaccgagcccgagtgcatggtgccggtcgtactcggagcgaagcag
ctgatcctcgttggcgatcactgtcaattaggaccggtggtcatgtgcaagaaagccgcc
agagcaggcttgtcgcagtcgctgtttgaaagactggtggtactcgggatcaggcctttc
agactggaagtacagtaccgcatgcacccggatctctcgcggttcccttccaacttcttc
tacgaaggttccctgcagaacggcgtgtgcgcggacgagaggaaactgttgaagatcgac
ttcccctggccggcacccgacaaacctatgtttttctacgtcacgcagggccaggaggag
atcgccggaagcggcacgtcgtacctgaatcgcacggaggcgtcgaacgtggagaagata
gcgacgaggttcctccgttgcggcgtgaagcccgaacagatcggggtgataacaccgtac
gagggtcagcgtgcctatctggtgcagtacatgcagtaccaagggtctctgcactcgaag
ctgtaccaggagatcgaggtggccagcgtcgacgcgttccagggcagagagaaggacata
ataatcatgtcctgcgtccgatcgaacgaacatcagggcatcgggttcctgaacgatccc
cgacgattgaacgtcgcgttgacccgtgctaaatacggtatcataattgtaggtaacccg
aaggtgttgtcgaagcaacccctgtggaatcaccttttgagcttctacaaggagcagaag
gttctcgtcgaggggcccctcaacaatctcaaagagtcgatgatccagttcgccaagcca
aagaaactcgtcaatgcggcgaacccgggctcccacttcatgtccacgtcgatgtatgac
gcgagggaagcgctgatcccgggctcggtgtacgacagatcgggtacccaggtgaacggt
acgcagaatcacaatccgtactaccaaaggaacgtgccgctggacatattcagcaggacc
cacgacaccatcagctacatcagcccggagagggcacaggccgcgatgaacaacgtgcct
gttcctgtaggcatgttcatgaacatggcgcacgtgccaccgcggttctacaaccagcat
caacaggccttgcaagccaggcagaatcaacggaatcgccggggcaccgctctgtcgaag
aacaaacagggcccgcgaatgggcaagctgagccaaaccgagcagaatacccagccgtac
agccagccgggattgccactgactcaaggcaccacacagggaatgtctcagccaggcttc
agcctgtcgcagcctggtctcagccaggcggagctctcccaagactcgttcgccgtcggg
gagtttcagtcgcagatggacggcctgttgtcgcaggactccacgtaccaaggtgaccgt
agcggattctatcaatccggtcagtcgcaagccgggggacagttctcccagccatattga
DBGET
integrated database retrieval system
