Frieseomelitta varia: 122529931
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Entry
122529931 CDS
T09482
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
fvi
Frieseomelitta varia
Pathway
fvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122529931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122529931
03041 Spliceosome [BR:
fvi03041
]
122529931
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122529931
Spliceosome [BR:
fvi03041
]
Complex B
Other components
Prp19-related factors
122529931
Complex C
122529931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
TPR_10
ARM_TT21_C
RPN7
DHR-2_Lobe_A
PPR
SNAP
Motif
Other DBs
NCBI-GeneID:
122529931
NCBI-ProteinID:
XP_043512413
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
SYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEATKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATDAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNPPSDVPVDAMRLLDSKTQDNITAYKDSIKFVRG
ATEKDGKAESQVNNPDEIDINIDDIDTEGDVEEDIPIEKQTIPSQVFGSLKTADGEDD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagacccagagggaaacctatatgtttttaatgaagaagatttacct
tacgaagaggaaattttgagaaatccttattcagtaaaacactggcaacgttatatagat
catttaaaaagtacaaaaagtagtaatttaaatattgtatacgaacgagcgttaaaggaa
cttcctggaagttacaaattatggtataattatctacgtcaacgtgtcaaccaactgaaa
ggaaggtgcataacagatccactctatgaagatgtgaacaatgcatttgaacgtgctttg
gtttttatgcataaaatgcccagaatttggatggactactgtacattaatgacagaacaa
tcttatattacacgtactcgtcaagtttttgatagagcactcagagctcttcctattacg
caacatcatcgtatatggccattatatattgaatttttgaaaaaacacaatgtctatgaa
actgcggttagagtttttagaagatatcttaagttagctccagaagatacagaagagtat
atagaatatctgatatcaattgaaagacttgatgaagcagctgtgaaacttgcacaaatt
gttaatcaagacgattttgtatcaaagcatggaaagtctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaaaaatccttctaagataaaatcccttaatgtagatgcaatt
attaggggtggtttgagacgctatactgatcaattaggtcctctatggaattctttggcg
gactattatgttcgtagtggtttattcgaaagggcgcgagacatttatgaagaggcaata
caaacagtgactactgttagagattttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagtaaacgtatggaagaagctacaaaaaatcctacagaagatgatgat
atagatttggaattgagattagcacgatttgaacatttaatggaaagacgtttattactt
ctgaattccgtattactcagacaaaatcctcataatgtacaagaatggcataaaagagtt
agactttatgaaggacagccacatgagatcattaatacatatacagaagctgtacaaact
gtgcaaccacaattagcagtaggtaaattgcatactttatgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagatgccagagttgtttttgaaaaagcaactcatgta
ccctatactaaagtcgacgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
agacatggaaattataaagaagcattaaaacttatgcatcgagctactgctatgccattc
cgtaaagtagcctatcacgatgaaacagaaacagttcaaatgagattatataaatcttta
aaagtttggtctatgtatgccgacttagaagaaagttttggaacattcaagacatgcaaa
gctgtatacgacaaaattatagatttaaaaatcgccacaccacaaattattattaattat
ggactctttttagaagaaaataaatattttgaagaagctttcagagcttacgaaaaaggt
attgctctttttaaatggcccaatgtttatgatatatggaatacatatcttacaaaattt
ttgaaacgttatggtggaacaaaattagaaagaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgccaaagctctgtatttattgtatgcaaaattagaagaa
gaacatggtttggctaggcatgcgatgtctgtgtacgaacgagcaacagacgcagttctt
cctgaagaaagatttgagatgttcaacatttatattaaaaaagcagcagatatatatggt
gttccgaaaacaaggcaaatttatgagaaagctatcgaagtgcttaatgaagataataca
agagaaatgtgtttacgatttgcagaaatggagacgaaattaggagaagttgatagagcc
cgagcaatatatgcgcattgtagtcaaatttgtgatccaagggtagcctcaaatttctgg
caaatatggaaagaatttgaagtaagacatggtaatgaagatactatgcgtgaaatgctc
cgaattaagcgcagcgtacaagctatgtacaatactcaagtgaatatgatgtctgcacaa
atgttaaataatgcatcgaatccaccatctgatgtaccagtagatgcaatgcgtcttttg
gatagtaaaacacaagataacattactgcatacaaagacagtattaaatttgttcgtggt
gcaacagaaaaggatggcaaagcagaatctcaagtgaacaatccagatgagatagatatt
aatattgatgatattgacactgaaggggatgtagaggaagatatacctattgaaaaacaa
actattccatcacaagtgtttggtagtttaaaaacagctgacggtgaagatgattaa
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