KEGG   Frieseomelitta varia: 122530893
Entry
122530893         CDS       T09482                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
fvi  Frieseomelitta varia
Pathway
fvi03040  Spliceosome
fvi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:fvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122530893
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122530893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fvi03041]
    122530893
   04121 Ubiquitin system [BR:fvi04121]
    122530893
   03400 DNA repair and recombination proteins [BR:fvi03400]
    122530893
Enzymes [BR:fvi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122530893
Spliceosome [BR:fvi03041]
 Complex B
  Other components
   Prp19 complex
    122530893
 Complex C
   Prp19-CDC5 complex
    122530893
Ubiquitin system [BR:fvi04121]
 Ubiquitin ligases (E3)
  U-box type E3
   122530893
DNA repair and recombination proteins [BR:fvi03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    122530893
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WDR55 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT122_1st U-box eIF2A B-prop_COPA_B_2nd WD40_like Cytochrom_D1 Beta-prop_WDR35_TULP_N PAS_11 PT-TG RMC1_N zf-Nse PROPPIN PUMA_CC
Other DBs
NCBI-GeneID: 122530893
NCBI-ProteinID: XP_043514207
LinkDB
Position
Unknown
AA seq 506 aa
MKMALSCAISNEVPEHPVVSPVSGSIFEKRLIEKYLAENGVDPITGKELTADQLIDIKTT
AIVKPKPPSATSIPAILKILQDEWDAVMLHSFTLRQQLQTARQELSHSLYQHDAACRVIA
RLTKEVTAAREALATLKPQAGIVQATTIPQPALAVEAGGTAAQPMEQAGITEDVIQKLQE
RATVLTQERKRRGRSVPEDLLPQDSIRAFQTLASHPGLHSASVPGILALDIHSADTSKIL
TGGADKNATVFNKDTEQVVAILKGHTKKVTRVIYHPEEDIVMTASPDTTIRVWNVGTSQT
TLLLKGHDAPVTGLSLHPTGDYLLSSSLDQHWAFSDIRTGRLLTKVAGQVSQPLTTAQFH
PDGLIFGTGTQDSQVKIWDLKEQSNVANFPGHSGPITAISFSENGYYLATAAEDSCVKLW
DLRKLKNFKTLQLEEGYEVKDICFDQSGTYLAVAGTDVRVYLCKQWQELKVLNDHTAAAT
GVRFGKHAQYIASTSMDRTLKLYGLP
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgaaaatggcgctttcttgtgcgatttctaacgaagtcccggagcatccggtcgtatct
ccagtatctggctccatatttgaaaaacgtttaattgaaaaatatctagctgaaaatgga
gtagatcctataactggaaaggaattaactgcagatcaacttattgatatcaaaactact
gcaatagttaaacccaaaccgccaagtgcaacatcaattccagctatattaaaaatttta
caagatgaatgggatgccgttatgttacattcatttacacttagacaacaacttcaaaca
gctagacaagaattgtcccattccttatatcaacatgatgcagcatgccgtgtcattgct
agattgacaaaagaagtaacagcagctagagaagctttagctactttgaaacctcaagct
ggaattgttcaagctacaactattccgcaacctgcacttgcagtagaagctggtggtaca
gctgctcagcctatggaacaagctggtattactgaagatgtaatacaaaagcttcaagag
agagcaacagttctcacgcaagaaaggaaacgtcgcgggcgttcggttcctgaagatcta
ttgccacaagatagcattcgcgcatttcaaacacttgcttcacatcctggtcttcattca
gctagcgttcctggtatacttgcgcttgatatacacagtgcagacacgagtaaaatttta
actggtggtgctgacaaaaatgccacagtatttaataaagacacagagcaagttgttgca
atattgaaaggacacacgaaaaaggttaccagagtaatttatcatccagaagaagatatt
gtaatgactgcatcacctgatactacaatacgcgtatggaatgtaggaaccagtcaaaca
actttattattgaaaggtcatgatgctcctgtaactggattgtccttacatccaacaggc
gattatttattgagttcatctttggatcaacattgggcattctcagatatacgtactggt
agattactgaccaaggttgctggacaagttagtcaacctttgaccacagctcagtttcat
cctgatggattgatctttggcactggcacacaagattctcaagtaaaaatttgggatttg
aaagaacaatcaaacgtagctaacttcccaggtcattcaggcccaattacggcaattagt
ttttctgaaaatggttattatttagctacagctgcagaggattcatgcgtgaaactttgg
gatttgcgtaaattgaagaactttaaaactctccaattagaagaagggtacgaagttaaa
gatatttgttttgatcaaagtggaacatatttggcagtagctggaacagacgtaagagtg
tacttgtgtaaacagtggcaagaattaaaagtgcttaatgatcatactgcagccgcaact
ggtgttcgtttcggaaaacatgcgcagtatatagcgtcgaccagtatggacagaacttta
aaactttatggtctaccttga

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