Frieseomelitta varia: 122531037
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Entry
122531037 CDS
T09482
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03013
Nucleocytoplasmic transport
fvi03015
mRNA surveillance pathway
fvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122531037
09122 Translation
03013 Nucleocytoplasmic transport
122531037
03015 mRNA surveillance pathway
122531037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122531037
03041 Spliceosome [BR:
fvi03041
]
122531037
Enzymes [BR:
fvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122531037
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122531037
Spliceosome [BR:
fvi03041
]
Complex C
Other components
EJC/TREX
122531037
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122531037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122531037
NCBI-ProteinID:
XP_043514516
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQLVDGSRDTPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIIDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgacgatcttttggattatgaagatgaagaacagactgaacaactagtt
gatggaagcagggatacacctgctaaaaaagaagtcaaaggcacatacgtatctattcat
agtagtggatttagagattttcttcttaaaccagaaatattacgtgcaattattgattgt
ggttttgaacatccatctgaagtacaacatgaatgtattccacaagcagtgcttggcatg
gatatattatgccaagcaaaatctggcatgggaaaaacagctgtatttgtgttagccaca
ttacaacaattagaattaactgaaaaccaggtttatgttcttgtgatgtgccatacacgt
gaacttgctttccaaattagcaaagaatatgaaaggttcagcaaatatatgcctcatgta
aaagttggagtattttttggtggcttaccaattcaaaaagacgaagaagtcttaaagaat
gtatgtcctcacattgttgttggtacaccaggtcgtatccttgctcttgtccgaaataaa
aaattaaatctaaaacacttgaagcactttatactcgatgaatgtgataaaatgctcgag
ctattagatatgcgcagggacgtacaggaaatatttagaagcactccacatggcaagcaa
gttatgatgttcagcgctacattgtccaaggagatacgccctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtggatgatgaagcaaaacttacattgcatggtctacaa
caacattatgtgaaacttaaagaaaatgaaaagaacaagaagctatttgaattacttgat
gtacttgaatttaatcaggttgttatctttgtaaaatctgtacaaaggtgtatggctttg
gcacaacttctaacagaacagaattttcctgcaattggtatacacaggggtatgactcag
gaagaacggttatcaagatatcaacaatttaaagattttcaaaaaagaattctagtagct
acaaatttatttggacgtggtatggatattgaacgtgtgaatatagtgttcaattacgat
atgccagaagattcagacacatacttacatcgagtagctagagctggtcgttttggtaca
aaggggcttgctattacattagtcagtgatgaaagcgatgctaaaatattgaacgatgtt
caagaacggtttgatgttaatattacagaattaccggatgaaatagatttagcttcatac
attgaaggacgataa
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