Frieseomelitta varia: 122531878
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Entry
122531878 CDS
T09482
Name
(RefSeq) uncharacterized protein LOC122531878 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fvi
Frieseomelitta varia
Pathway
fvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122531878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fvi03021
]
122531878
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122531878
Transcription machinery [BR:
fvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122531878
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122531878
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
122531878
NCBI-ProteinID:
XP_043516088
LinkDB
All DBs
Position
Unknown
AA seq
1901 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIAPVKLPPG
DPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKSELVA
ATAHITSSTDTVTQGKPVTSVALSQAPKQVAKQFPAATASLLKNAGTNNGPRIAPASSIA
VASAKPVSRDPRLKTTSAQDVPVSSVDPRQRISTPTQKDSRGEGQAQLAANTNTVLSDQL
KQQLILKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNFNNNNNNKNFSGNANKDAVS
HRTSQKKDPRLSSNSSGNLNSNSSKGSQSLSVGNNSSLSASNRGSGSNDSKSKDSKNSNS
RTSSSSVIDKSSSSSKSSHRKIGNKSRSKQPQTSPSKIPKVDRDASPIRSKSREKDSGDS
SSPSSRTSPQSFQNSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNSSLSNSSGVTEEEQSG
SLIVSPPHPPTFKEIRANARQRNYVRRNKDGSLSPERSPANAGNVQTTEPTLESSSKDED
LRATLPLPGAAASVLEKKEDLDLRVLPPPVNTNKRQTEHMESSLTKKTKAEKFDALFGNE
DVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQTNNTDDKRDARDRN
RDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKTEKNEDRNIEIIMKQAAE
QLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDMTGPGDRTST
FSPSGDKEIMRNKDHPISRNPNGPRWQNQPWQQPGPWAHPPGPPYGGPQGHFSSEFRPVG
PWQNPRHFGPMRPDYQYHGGFNHSIGPNPRLGPGMMGPMGPNGPLMSNLIPNGPIGPMGM
PNPPISLSGMNGPGMMMNNGPMSTLISNANMSSLNASRNVSPSSSSKYDIEDSDQNYNTT
TVKNPNPHSRELPPPDPKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPRE
IGFQDGIRRILIDDKITITCAFNDNYKEFIYEGEVHRIKLGAPTRELYIDDRWYECYFGG
MPITVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFE
IEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRNVRPGYVKI
AGMKGEEPIEAPPTPPLLTQKPKVDATSTPTQFSAVEHESTSQDGSDLRSTPKPDLQLDV
LSSALPSAMAPSSGLSYQAEPVENPATTAPPLSLPLNMNELFQRLVETGIVSNLSEQKKP
EEEEKKEPEIIPVSFDKPETLKVKQSAIAAALYSGMQCSSCGARFAPELATRYSHHLDWH
FRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGVTTEDS
PQEASQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEEKNYHPLCLDDYKE
KSLVRALEKSALALEETIEEMEEEKKEGPDETFAEENKTDELSMEALNTEFETVQPLDEI
MENKVLEESSETENKEEETIIEDNVNIEQNEKQDESELNYNNKDVDMESIEKGDTIETEI
TGATENVDKSFENIKIKEEPIDEPEEQLEEDFDFTNVEIKEEPIEPEPDPEESVIAEPAT
VDTTYAAVKSSIDGNVELDSTPAAIPAAPSRIKINITKPLCINKEPEDSKEKEKPIVETP
AEEIIEPLVPASIKPALQGRKLSNLPPVERGQELSGLCSIM
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atgacatccacaaaatctaaggaaatagcggatgagtacatctcgtcattatctgatttg
acgatcaatagtaaaccattgattaatatgcttactatgttggctgaagacaacatagaa
catgcaccagcaattgtacaagctgtagaaaatcacctacaaaaggtgaggagtgatatt
aaattacctgttctttatttgattgattcgattgtgaaaaatgttaatggagcatattta
aatctgttcacacaaaatattgtaaatactttttgtggagtatttgaaaaggtggatgag
aatacaagagctagcatgtggaaattaaggcaaacatggaatgatgtatttccagcaaaa
aaattattttctttggatgtacgagtgcaaagtattgatcctgcctggccaatcactgcc
tctcctactagtgtttcttcgggatctattcatgttaatcctcgttttttttcaatgccc
caacaatcagcaacatctattgtctcacaaccaatagcacctgttaagcttccaccaggt
gatcctgtgacaccaacggaagcagcaatgcgagagcaattattgaagaaacaacgagaa
ctgatagaattacagaaaaaaaagattgaattagaattacttcaagctaaagctaattta
gaacaacaacagcggcaactcgataaacaagctggaaatttgaaaagtgaactggttgca
gctacagcacatattacatcaagcacagacactgtcacacaaggaaaacctgttacaagt
gttgcgctaagtcaagcaccaaaacaagtagcaaaacagtttccagcagcaactgcttcg
cttctgaaaaatgcaggaacgaacaatggtccacgaattgcaccagctagtagtatagca
gtagcatcagctaaaccggtatctcgtgacccaagattaaaaactacctcggctcaagat
gtaccagtttcaagcgtggatcctcgacagcgaataagtacaccaactcagaaggattcg
cggggcgaaggccaagcgcagctagcggcaaatacaaatactgtactttcagatcaatta
aaacagcagttaattttgaaacaggctgtgactagcactatcaacaagtctccgacaaat
cttgccggctccgatactgcgacattaaacgctagtaataacaataatgctaatacgaac
ttcaacaataataataacaataaaaatttcagtggtaacgcaaataaagatgctgtgtcg
catcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaacctaaac
agtaatagctccaaaggttctcaaagtctgtctgtgggtaataatagttctttatccgcg
agtaatagaggaagtgggagtaacgattccaagtcgaaagattcgaagaattcgaactct
cgaacttcttcatcttcggtaatcgacaaatcttcctcttcttcgaaatcctcgcataga
aaaataggaaataaatcgcgatctaaacaacctcaaacatctccgagtaaaataccgaaa
gttgacagagatgccagtcctattaggtccaaatctcgtgaaaaagatagtggagatagt
tcatcaccatcctcgcgaacctctccgcaatcctttcaaaactccaaaaatcgaaaaaaa
aatacgaaatctagaaaacgcagtccaagccctccatacagaattcctaggcgtaatgat
gcaaaatccaactcaagtctaagcaattctagtggtgtcactgaggaggagcaatctggt
tcattgatagtctctcctcctcatccacctacatttaaagaaatcagagcgaacgctaga
caaagaaattacgtaaggcgtaacaaggatggcagtcttagtcccgagcgctctccagca
aatgctggaaacgttcaaaccacggaaccaactttggaatcatccagcaaagatgaagac
ttgagagcaacactacctcttccaggtgcagccgcttcggtattagaaaagaaagaggac
ttagatttacgtgtattaccaccaccagttaatactaacaaaagacaaactgaacacatg
gagtcttcgttaacaaagaaaacaaaagctgagaaatttgatgcattatttggaaatgaa
gatgttgatctacgaacattgactcatcctaaagctggacgaccacctacaccaccccca
cctgtaatatctggtgaagatggcaaagatgggtgggcaaaactaaagacaccgtcaaag
aatgatagagaaaagcaaactaataatactgatgataagcgtgatgccagagatcgtaac
agagatagattgggcagattgaggctttataacaagcttccagatgaccctaaggaaaga
agaagaacattatcgaacgaagatcaagataacagatcaggtcgaagaggtagagaaaat
gataagactgaaaaaaatgaagacagaaatattgaaataataatgaaacaagctgcagaa
caattgaatcaaggttctattactaaaactcagtacaatactcttattcaagaagtttta
catatgagcgaagatcggaaattgagagccgctcaacggaaggagaaagaagtaggttcc
atcgtctgggaaaagggtgtcaatttagatatgacaggtccaggcgatcgtacgtctaca
ttcagtccttccggcgacaaggaaataatgagaaataaggatcatcctatttcaagaaac
ccaaacggtcctagatggcaaaatcagccgtggcaacaaccaggaccatgggctcatcca
cctggacctccttacggtggtccgcaaggacattttagttcagagttcagacctgttggt
ccatggcaaaatccaagacactttggaccaatgcgacctgattatcaatatcatggtggg
tttaatcattcaattggcccaaatcctcgtttaggacctggaatgatgggacctatggga
cctaatgggccgctcatgtcaaatttaatacctaatggtccgattgggcctatgggcatg
cctaatccgcctatatcattatcgggaatgaatgggcctggaatgatgatgaataatgga
ccaatgtcgactcttatatcaaatgcaaatatgtcatcgttgaacgcttcgagaaatgta
tcaccgagttcatcttcaaaatatgacatcgaagatagtgatcagaattataatacaaca
acggtaaagaatccaaatcctcatagtcgtgaattaccaccgccagacccaaaactattg
gatgaaattgcgagagatacgatgaaatctatagatatagacatacaacatataccacgt
gaaattaggtactacggccaaaccggagtagtttttatgaattgggatgatccaagagaa
atcggatttcaagatggtatacgacgaattttaatagacgataagatcactataacctgc
gcatttaatgataattataaagaatttatttacgaaggtgaagttcataggattaaatta
ggtgcgccaacgagagaattatatattgatgataggtggtatgaatgttatttcggtggt
atgccaataacagtagatcttggtggtaaaaaagttagtgtgaaattggaaggacctccg
ccccttgttaaaattggtactgtaaagagaacagacttagtagttgccaaaattaatctt
attattaatgcccgaaatatggttcctgtatttttagacgcaaaacctcaaatattcgaa
attgaagggaaacctcatacacttgaatttatagactcgttacaaacagtccttttaaat
ggacggccgtttaaagtggaatttggtggattgcctaaacctattattgttagagataag
aagcattttataagattttcggtattgcctagaaacgtccgaccaggatatgttaagatc
gcaggtatgaaaggtgaagaacctattgaagcaccacctactccacctcttttaacccaa
aaaccgaaagtagatgcaacctctacgccaacgcaattttctgctgttgagcatgaatca
acgtcacaagatggttcggatcttagatctactcctaaaccggatttgcaattagatgta
ttatcttctgccttgccatctgcaatggcaccatcatccggattatcttatcaagctgag
ccagtagaaaatccagctacaactgctccgccattatcactaccattgaatatgaacgaa
ctatttcagagattagtagaaactggtattgtatcaaatctttctgaacaaaagaaacca
gaagaagaagagaagaaagaaccagaaattattccggtttcatttgataaaccagaaacg
cttaaagttaaacaatccgctattgcggcagcattatacagtggcatgcaatgtagttct
tgtggcgctagatttgcaccagaattagcaactcggtatagtcatcatttagattggcat
ttcagacaaaatagacgagaaagagattctgccagaaaggctcattcacgaccttggtat
tatgatgttagtgattggatacaatttgaggaaattgaagatttagaagatagagtgcaa
agctggtttgaaactgaaaaacaaacggctgatacggaaggtgtaacgacggaggattct
cctcaagaagcgtcgcagcctagtgttcccactggaactgatgaggattctagatgtcaa
gtatgtcatgatgcatttgaacaattttataatgaagaaaaggaggaatggcatctaaga
ccggcaattaactttgaagaaaagaattatcatccattgtgtctcgatgattacaaggaa
aagagtcttgtgagagctttggaaaaatcggcattggcacttgaggaaacaatagaagaa
atggaagaagaaaaaaaggaaggcccagatgaaacgtttgcagaggaaaataagactgac
gaattaagtatggaagcattaaatactgaatttgaaacagtacaaccgttagatgaaata
atggaaaataaagtactagaagaatcttccgaaacggagaataaagaggaagaaactata
attgaagataatgtaaatattgaacagaacgaaaaacaagatgaatcagaattaaactat
aataataaagatgttgatatggaaagtatagaaaaaggagatacgatcgaaacagaaata
acaggtgcaacagaaaacgtggataaatcttttgaaaatatcaaaattaaagaagaacca
attgacgaacctgaggaacaattagaagaagatttcgactttactaatgtagaaattaaa
gaagaacctatcgaaccggaaccagatcctgaagaaagcgtaatagctgaaccagcgacg
gttgatacgacatatgctgctgtgaagagttctatagatggaaatgtagaattggattct
acgcctgcagcgattccagcggcgccatctcgaattaaaattaatattacaaaaccatta
tgtattaataaagagccagaagattcaaaggaaaaagaaaaacctatagttgagacacct
gctgaagaaataatagaacctttggtgcctgcttctatcaaacccgctttacaaggtaga
aaactttcaaatttacctcctgtggaaagagggcaagagttatcaggactctgctcaatt
atgtaa
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integrated database retrieval system
