Frieseomelitta varia: 122536272
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Entry
122536272 CDS
T09482
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122536272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122536272
Enzymes [BR:
fvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122536272
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122536272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_NFXL1
DUF5126
Motif
Other DBs
NCBI-GeneID:
122536272
NCBI-ProteinID:
XP_043524438
LinkDB
All DBs
Position
Unknown
AA seq
575 aa
AA seq
DB search
MEVTSLNFQEVLAELNEAIENATFLSIDGEFTGLNSGPDAGAFDTPAQYYAKLRSGSMDF
LLVQFGLSVFTLNTETQKYSQRSYNIYIFPRPLNRSATDCRFMCQTSCMSFLASQGFDFN
KLFKFGIPYLTANEEERLVKRLEEKQKVREETVGVELLPILDVDRPQIEEICRKIDEFIT
SEEEELVIDKCNAFIRRLIYQEAKLRWPNKLRIESKLENFACSLVVQRSGTKEEEEQKDV
EKREKERTEIQQAVGLSMLMRKIADSGKLIVGHNMLLDLCHIVHQFFGHLPESYLEFKSL
VHSLFPRLLDTKIICHSQQFKETVPSSNLSVLLETVSKSPFKITEVESVEGRSYSTLADK
CHEAGYDAYITGICFIALSNYLGSLQNPEVPIVLSDSPLLNPFLNRLLIARLKDIPYINL
VGEDPNPNRDHIFHMTFPKEWKFNDINQLFSPFGGVQVSWLNDTSAYIGLHRRDQVNAVM
KSLGKTNTYKIQKYADYQASLGIAVRSGDRKRKLSSSEAVSTKKGENSVPTNGVKSTKDD
DGWEVATGKRRRKRKDHIDAAQKTKPALFPQADWE
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacttctttgaattttcaagaagtccttgcggaattgaatgaagccatagaa
aatgcaacgttccttagtatcgatggtgaattcacaggacttaattcaggacctgatgct
ggtgcctttgacacccccgctcaatattatgcaaaattgagatcaggatcaatggacttt
cttcttgtacaatttggcctttctgtatttacacttaatacagaaactcaaaaatatagt
caacgatcatacaatatttatatttttccacgtcccttaaatcgctcggctacggattgc
agatttatgtgtcaaacatcctgtatgtcatttctggcatcgcaaggatttgatttcaat
aaacttttcaaatttggtattccttatttaaccgcaaatgaagaagaaagattagtcaaa
cgattggaggagaagcaaaaagtaagagaggagacagtaggagtagaattattgcctatt
ttggacgttgacaggcctcagattgaagagatttgtagaaagatagatgaatttatcact
tctgaagaagaagaactagtaatcgataaatgtaatgctttcatcagacgactcatttat
caggaagcaaagttgaggtggccaaataaattgagaattgaaagtaaattggagaatttt
gcatgtagtcttgttgtacaaagatcaggaaccaaggaagaagaagaacaaaaggatgtt
gaaaaaagagagaaagaaagaacagaaattcaacaggcagttggattgagtatgctcatg
agaaaaattgcagattctggaaaattaatagttggtcataatatgttactagatctctgt
catatagtacatcaattttttggacatttaccagaatcatatttggaatttaagtctctt
gttcatagcttatttccaagacttttagatacaaaaataatttgccattcgcaacaattc
aaggaaactgtaccatcgtcgaatttaagtgtgttgctagaaacagttagtaaatcaccg
tttaaaattacagaagtggaatctgtcgagggtagaagttattctacattggcagataaa
tgtcacgaggctggttatgatgcatatataactggaatatgtttcattgcattgtctaat
tatcttggttccttacaaaaccccgaagtgccgatagttttgtcggattcaccgctactc
aatcctttcctaaatagacttcttatagcaagattgaaagatatcccatatataaactta
gttggagaagatcctaatccaaatagagatcatatatttcatatgacattcccaaaagaa
tggaagtttaacgatataaatcaattgtttagtccatttggaggagtacaagtatcttgg
ttaaacgacacgtctgcgtacataggattacatcgtagagatcaagttaacgcagtaatg
aaatctctaggtaaaacgaatacctacaagatacaaaagtacgctgattaccaagcttct
ttagggatagccgtccgttcaggagatcgtaaacgaaaattatcctcatccgaggcggtt
tcgacgaaaaagggggaaaactcggtgccaacgaacggcgtgaagtctactaaggacgac
gatggctgggaagtagccacagggaaacggcgtcggaagcgaaaggaccatatagatgct
gcacaaaaaacgaagccggcattgtttcctcaagctgactgggagtag
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