Frieseomelitta varia: 122536448
Help
Entry
122536448 CDS
T09482
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fvi
Frieseomelitta varia
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fvi03016
]
122536448
Enzymes [BR:
fvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122536448
Transfer RNA biogenesis [BR:
fvi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122536448
Prokaryotic type
tRNA splicing ligases
122536448
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122536448
NCBI-ProteinID:
XP_043524759
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEEIKYLEKITETCWRIKKGFQPNMKVEGVFYVNNSLERLMFDELKNSCRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSTRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFQQSPDDLDMHVIYDVSHNIAKIE
EHMVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQAM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLEKLERQGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagttagacagtatcaggaagaaataaaatatttagaaaagataactgaaacatgt
tggagaataaaaaaaggtttccaacctaatatgaaggttgaaggtgttttttacgtaaat
aatagtttggaacgtttaatgtttgatgaattaaaaaattcatgcagaccaggagcagtg
ggtggctttctccctggtatgaaacaaattgccaatgttgctgctcttcctggaatcgtt
tggaggtctgtcggattgcctgatgtacattctggatatggttttgcgattggtaatatg
gcagcatttgatatgaatgatccaaaatctatagtatcacctggtggagtaggatttgat
ataaattgcggagtacgtttattaagaactaatctgtttgaggaagatgttttacctgtg
aaggagcaacttgcccagagcatgtttgatcatattcctgttggtgttggttcaaaagga
attatacctatgaatgcaagggatttagaagaagccttggaaatgggaatggattggtct
ctaagagaaggttacatctgggcagaagataaggaacattgtgaggagtacggtagaatg
cttaatgcagattcttctaaagtgtcaacgagagctaaaaaacgtggacttccgcagtta
ggaacattaggtgctggaaaccactatgcagagattcaagtagtagatgaaatttatgac
aaatgggcagcatgtaaaatgggtattgaagagaagggtcaaatttgtgtgatgattcat
tctggcagcagaggatttggacatcaagttgcaaccgatgcccttgtacaaatggagaaa
gctatgaaacgagataatattgaaactaacgataggcagttagcttgtgctcatataaaa
tctcaagaaggtcaagattatttaaaagctatggctgccgccgcgaattttgcatgggtt
aatagaagctctatgacattcctcagtcgacaagcatttgccaaacaatttcaacagtct
cccgatgatttagatatgcatgttatatacgatgtttctcataatattgcaaaaatagag
gaacatatggtcgaaggaaaacagaaaacccttctagtacatagaaagggatctacaaga
gcctttccacctcatcatcctttaattcctgtagattatcaattaacaggtcaacctgtt
ttaattggtggtactatgggaacttgtagttatgttcttaccggaactgaacaggccatg
aaagaaacatttggatccacgtgtcatggggcaggtcgagctttatccagagctaagtca
cgtagaaatttagattacactgatgtattagagaaattagaacgacaaggaatctcgatt
agagtcgcttcacctaaattagttatggaagaagcaccagagtcttacaaaaatgtaaca
gatgtcgtaaatacatgtcatgctgcaggcatttctcggaaatgtataaaattaaggcca
atcgcagttatcaaaggataa
DBGET
integrated database retrieval system
