Frieseomelitta varia: 122536866
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Entry
122536866 CDS
T09482
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fvi
Frieseomelitta varia
Pathway
fvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122536866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122536866
03041 Spliceosome [BR:
fvi03041
]
122536866
03009 Ribosome biogenesis [BR:
fvi03009
]
122536866
03016 Transfer RNA biogenesis [BR:
fvi03016
]
122536866
Enzymes [BR:
fvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122536866
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122536866
Spliceosome [BR:
fvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122536866
Complex C
U4/U6.U5 tri-SnRNP related factors
122536866
Ribosome biogenesis [BR:
fvi03009
]
Eukaryotic type
Pre-60S particles
Helicases
122536866
Transfer RNA biogenesis [BR:
fvi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122536866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
122536866
NCBI-ProteinID:
XP_043525540
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MASFAEDLFDVFEETEDVIEVIPTPVKSKNEDLNASLNEKETNAESGTKRELENDSDEFI
SKKLRSDSILEDLNIEELTSRIKIHTIETIESCTHEVAVPPDYEYVPLENKQGKPAKEYK
FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAVACSLRDKQRVIYTTPIKALSNQ
KYREFFEDFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQ
HYIFPVGGDGIHLVVDEMGQFKEENFNRAMACLQHGDAAKGDTKGRKGGIRPSNVGQTNI
FKIVKMIMERNFAPVIIFNFSKKDCETYAMQLAKLDLNTLEEKKLVDEVFNNAMDVLNPE
DRRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPAR
TVLFAASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKAIVQG
KPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPNLYNKVKDLQIAYNA
VTIDKYNHISSYHDIREQLERLSTEFRSFLTKPEYLLPFLQPGRLVKVKNENEMFDWGII
VNFKKKNPRNPSKENTVIIIDILLHISKDSSEGCPVPCHEGEEGDMEVVPVIHTLISQIS
SLRLYYPKDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMGIKDETFKDIVKKIEML
EERLYAHPLHKDPDVNTLYEQFLYKEDLGNQLKQAKLELKEAKSILQMDELKCRKRVLRR
MAYCTASDVIELKGRVACELNGTDELLMTEMIFNGLFNSLNIPQMVALISCFVCDDKSNE
MPKSTEELSGPLRQMQDLARRIAKVSTEANLELDEDAYVERFKPYLMDIVYAWCKGATFL
QICKMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggctagtttcgctgaagatttatttgacgtttttgaagaaacagaagatgtaatagaa
gtaattccaactccagtaaagtcaaaaaatgaagatttaaatgcatcattaaacgaaaaa
gaaactaatgcagaaagtggaactaaacgagaacttgaaaatgattctgatgaatttatt
tccaaaaaattacgatctgattctatattggaggatttaaatatagaagaattaacatca
cgtattaaaatacatacaatagaaacaattgaatcatgtacacatgaagttgcagttcca
ccagattatgaatatgtacccctggaaaataaacaaggcaaaccagccaaagaatataaa
tttgtattggatccttttcagaaagaagcaatattatgtattgaaaataatcagtcagtt
ttggtttctgcacatacatcagctggtaaaactgttgttgcagagtatgcagttgcatgt
tcattaagagataaacaaagagttatttatacaacacctataaaggcattaagtaatcaa
aaatatagagaattttttgaagacttcaaagatgttggcttggtaactggagatgttaca
attaatccaacagcaagtgtacttatcatgactactgagattttaaggaatatgctgtat
agaggatctgaggtaatgcgtgaagttggatgggtaatttttgatgaaattcactatatg
cgtgacaaagaaagaggggttgtttgggaagaaacattaatattattaccggacaatgta
cattatgtattcctttctgctactatacctaatgccagacaatttgtagagtgggttgca
catttacacaagcaaccatgtcatgttgtttatacagattacagaccaactcctttacag
cattatatatttcctgttggaggcgatggtatccacttggttgtagatgaaatggggcaa
tttaaagaagaaaattttaatagagcaatggcttgcttgcaacatggtgatgcagctaaa
ggggatactaaaggtcgtaaaggaggtattcgaccatcaaatgttggacaaacaaatatt
tttaagatagttaaaatgattatggaaagaaattttgcacctgtaattatatttaatttt
tcgaaaaaggattgtgagacatatgcaatgcaattggctaaattagatttaaatacatta
gaagaaaaaaaattagtagacgaagtatttaataacgctatggatgttctcaatccagaa
gatcgacgtttaccacaagttgaaaatgtattacctcttttaagacgaggaataggtatt
catcatggtggacttttacctattttgaaagaaactgtagaaatactgtttggagaagga
ttaataaaagcattattcgcaacagaaacttttgctatgggattaaatatgccagcacgt
acagttttatttgcagcatcacgaaaatttgatggtaaagatttccgttggattacatct
ggagaatatatacaaatgtctggtcgcgctggaaggagaggcttagatgagaaaggaata
gtaatattaatgatagatgagcaagttagtccagtcgttggtaaagcaattgtacaaggg
aaaccagatcctattaattcagcctttcatttaacttacaacatggttttgaatctttta
agagttgaggaaattaatccagaatatatgttggagagaagtttttatcaatttcaaaat
caagcctccattccgaatctatataacaaagtaaaagatttgcaaattgcatataatgca
gtgacgattgataagtataatcatatctcttcctatcatgatatacgtgaacaacttgaa
cgtcttagtactgaatttagatcttttctaacaaaaccagaatatttacttccattttta
caacctggaagattagtaaaagtaaaaaatgaaaatgaaatgtttgattggggcattatt
gtaaatttcaaaaagaaaaatcctagaaatccatcaaaagagaacactgttattattatt
gatatattacttcatatttctaaagactctagtgaaggatgccctgtaccttgtcatgaa
ggagaagaaggtgatatggaagtagttcctgttatacatactttaatttctcaaataagt
tcacttagattgtattatccaaaagacttaagaccatctgataacagaaaaagcgtatta
aaaacgatacaggaagtaaaaaaaagatttccagatggaccaccattgttgaatcctatt
acagatatgggtattaaagatgaaaccttcaaagatattgttaaaaaaattgaaatgcta
gaagagagattatatgctcatccattgcataaggatcctgatgtaaatactttatacgaa
caatttttatataaagaagatttaggtaatcaactgaaacaagctaagttagaattaaaa
gaagctaaatcaatacttcaaatggatgaattaaaatgtagaaaacgggtattacgaaga
atggcatattgtacagcatcagatgttatagaattaaaaggcagagttgcttgtgaactt
aatgggactgatgagttattaatgacagaaatgatttttaatggtttatttaattcgtta
aatattccgcaaatggtagcattaattagttgttttgtttgcgatgacaaatcgaatgag
atgcctaagagtactgaagaattaagtggtccactcagacaaatgcaagatttagctcga
agaatagcaaaagtatctacagaagctaatctagaactagatgaagatgcatatgtagaa
agatttaaaccatatttaatggatattgtatatgcttggtgtaaaggagctacttttttg
caaatttgtaaaatgacagatatatttgaaggttctatcataagatgtatgcgccgttta
gaagaagttcttagacagttatgtcaggcagcaaaaaatattggaaatacggatttagaa
aataaatttagtgaagcaattaaacttataaagcgtgatattgtttttgctgcatcttta
tatttataa
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