Frieseomelitta varia: 122537307
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Entry
122537307 CDS
T09482
Name
(RefSeq) uncharacterized protein LOC122537307
KO
K03679
exosome complex component RRP4
Organism
fvi
Frieseomelitta varia
Pathway
fvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122537307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvi03019
]
122537307
Messenger RNA biogenesis [BR:
fvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122537307
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122537307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
KH_6
EF-hand_1
EF-hand_5
ECR1_N
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_4
Motif
Other DBs
NCBI-GeneID:
122537307
NCBI-ProteinID:
XP_043526311
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MEEYPPIIVRLAINRIDLNLIKNENVQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRAS
VAGVLEKVNKLISIRPLKARYQGEIGDVIVGRITEVQQKRWKVDTNSKLDSVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKVS
PALIKRKKTHFHNLECGASLILGNNGYIWIGANKQDSDRSEGGFTQDLSRIPQVNREVCA
RLRNCILILAQCNIQLTDTSVTYAYEESMKYKINERRNKKFYQRNMDACFTAFDKDGDGY
LSIMEFEFICRALFRNDRGKVYNVDESQLKEIYSIFDLNGDGKIDKEEFEICWNRWIKIC
TRPKSAFLIVDVQNDFITGSLNIKQCAAQHDGSEVIEPINRLLETVQFDAVFYSLDWHPM
DHVSFIDNLHLREVDPSSGISKEAAQVYDTITFRGPPLLKQRLWPRHCIQDSWGAELHKD
LKIVDNAIKIYKGTNPEVDSYSVFWDNKKMMETSLSSQLQEKSATDIYICGLAYDVCVGA
TAIDALTNGYRTILIDDCSRGVDLVDIEKTKTTVIANNGVIVNSSQVKAMVEGKDRRPEL
GYKLAIEIKRKLNFIDDDNQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatatccacctattattgtacgtttggcaataaatagaatcgatctaaattta
ataaaaaatgaaaatgtacaacctcgaatttatactccaggagaagaaatttctagtcaa
cctgattttttgagaggacatggaacatacgtggacgatgaaaacacattacgtgcatct
gtagctggtgttttagaaaaagtaaataaacttatatcaatcagacctttaaaagcacgt
tatcaaggtgaaataggagatgtaattgttggtcgcataactgaagtacagcagaaacga
tggaaagttgacacaaattctaaacttgattctgtattacttctttctagtgttaattta
ccgggtggtgaattgagaagaagatcagcagaagatgaacaaactatgagacggtatctc
caggaaggagatctaatttgtgcagaagtacaaagtacttttgtagatggttcactttca
ttacacactagagtcttaaagtatggtaaattgtctcagggtataatgttaaaagtatca
ccagctcttataaaaagaaagaaaacccattttcataatttggagtgtggtgcaagttta
atattaggaaataatggttatatatggattggagctaataaacaagatagtgatagatca
gaaggtggttttacccaagatttatcaagaattcctcaagtaaatcgcgaagtttgtgca
cgattacgtaattgtattttaatcttagcacaatgtaatatccaacttacagatacatct
gttacatatgcttatgaagaatctatgaaatataaaataaatgaacgtagaaacaagaag
ttttatcaaagaaacatggatgcatgttttactgcatttgataaagatggagatggatat
ttgtctattatggaatttgaatttatttgtcgtgcattatttcgtaatgatcgtgggaaa
gtttataatgttgatgagagtcaattaaaggaaatatattctatatttgacttgaatgga
gatggaaaaattgacaaagaagaatttgagatatgctggaatcgttggattaaaatatgc
acgcgtccaaagagcgcgtttttaattgtagatgtacagaacgattttataacgggctct
ttaaatattaaacaatgtgctgctcagcatgatggttcagaagtaattgaaccgattaat
cgtctattggaaactgtacaatttgatgcagtgttttattctcttgattggcatcctatg
gatcatgtatcctttattgataacttacacttgagagaagttgaccctagtagcggaatc
tcaaaagaagcagcgcaagtttatgataccattacgtttagaggtccaccattactaaaa
caacgtctttggcctcgtcattgcattcaagattcttggggtgctgaacttcataaagat
ctaaaaattgtggataacgcaattaaaatatacaaaggaactaatccagaagtagactca
tattccgttttttgggataataaaaagatgatggaaacaagcctatcttcgcaattacaa
gaaaaaagtgcaacagatatatatatttgcggattagcttatgatgtttgtgttggggct
actgcaatagatgcacttacaaacggttatcggactattttaattgatgattgcagccga
ggagtagatcttgttgacattgaaaaaactaaaactactgttatagctaataatggcgta
attgtaaattcaagtcaagtaaaagcaatggttgaggggaaagatcgtcgaccagaactt
ggatataagttagccatagaaattaaacgaaaattaaattttatagatgatgataatcaa
taa
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