Frieseomelitta varia: 122537973
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Entry
122537973 CDS
T09482
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
fvi
Frieseomelitta varia
Pathway
fvi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
fvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122537973
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fvi00536
]
122537973
Glycosaminoglycan binding proteins [BR:
fvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122537973
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
122537973
NCBI-ProteinID:
XP_043527606
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MGLKALQITAAFVVAQLLLLQVHSVRIKLRKQRSKPLQAQQSANGDYDYDYYESYDDYDD
KNETTTTTTSSPLVTSGVNTASRGLSGEYYRSGLSTDIPAQTTIRNFNQVGVLPDEMQTT
PERNRASPTEITPGESNMISAVAVPGPRGEPGRPGDIGRPGDAGFPGEPGFPGIPGPPGP
PGPIPDVSMYYQQLALSQANQDKGPTGAAAPLYGPEAYLQMQTGPIGPRGPPGPPGPPGP
QGFQGMRGESGEPGPSGPPGTPGPRGLSGLPGKDGNIGEDGEPGPPGSVGPAGPRGLPGM
PGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGAPGLMGPIGPMGPAGPRGERGREGPPGP
PGIRGVDGIVGPPGQPGALGKPGSPGFPGNPGAKGDQGAQGPKGSQGIQGPRGETGRPGQ
PGESGPQGPQGKDGIPGEKGNMGAPGLVGAPGFPGTRGQPGIPGNPGIPGTKGMPGLPGE
RGFKGDSGGKGDTGTPGPRGLPGPPGNEGKRGKRGMRGPIGAPGPTGERGASGAPGLPGL
DGPVGPKGQSGDRGPTGPMGLKGAAGDLGRPGPPGLQGTRGLMGRPGAPGKLGNPGERGI
QGADGKPGEQGPPGLQGLPGPIGLPGEKGYPGETGKAGEPGNPGPPGPRGDTGKEGAPGP
QGSPGPSGTDGERGAPGSPGPRGFQGFPGATGNPGTPGKDGEPGVQGPPGPSGAPGNRGE
RGFPGERGIPGASGLTGPRGEPGVQGLDGPPGLPGEKGDKGISGPPGLLGLPGLRGIPGE
SGPKGERGSSGPPGPEGPPGRIGERGPQGQIGPPGPPGEPAERGDPGLPGPPGEVGASGN
PGERGPQGLQGLQGFPGQQGLIGLPGLKGDRGYPGLKGDQGNPGSPGSPGETGPQGLIGL
TGAKGVRGEPGIRGEPGIMGPPGVPGIIGATGPSGAPGPPGSPGLPGSKGNIGEAGRPGS
PGPIGSPGSPGADGNKGESGSQGLPGAPGPQGPQGSPGERGLPGLPGPFGPIGSKGVRGA
PGETGIPGKPGTEGPPGPPGQIGPIGPPGPPGEIGAEGPTGKPGPPGIAGRLGDKGPPGA
VGQTGLPGPPGLPGSHGQAGPPGPAGERGPKGETGPQGVEGQQGPRGKPGPIGLEGPKGD
RGEEGQKGVKGHRGFTGLPGLPGPTGLPGEKGIPGFPGLPGKDGEPGLRGSPGRDGNPGI
IGLTGNPGPKGPPGEEGRHGPPGPPGPPGPPGPPGELGLGYDAASLAALLGQGQTKGPDP
LVGDEPPRIFSQDMTEEERKELILKAYKQLKSSFQKFIRPDGKKNSPAKTCRDLYTAYPD
KLSGEYWVDPNEGDARDAILVYCDAKKRATCLLPSPVRSPEIKYITDQPETWLSEIEDGM
KITYKADSNQIGFLQLLSTRAYQNMTYHCKNSIGYFDSEQKTYRKGMKFLTWNDVELMPR
GNQRLRYDMIIDECKVYNGEWGKTTISYQTDKPVRLPIIDVALRDIGNSDQSFSIEIGIV
CYE
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atggggctgaaagccctacagataaccgcggcgtttgtcgtggctcagcttcttttgctg
caggttcattccgtacggatcaaactcaggaaacaacgctctaaaccgctgcaagctcaa
caatctgcaaacggtgattacgattacgattattacgagagttatgatgactacgatgac
aaaaatgaaactacaactacaaccacatcgtcaccacttgttacatctggcgttaacact
gcaagcaggggattatcgggagagtactacaggtctggattgtctacagatataccagcg
caaacgacaattcgaaattttaatcaagttggtgtattgccagatgagatgcaaacaacg
ccagaaagaaatcgtgcatcaccgacggaaattactcccggcgaaagtaatatgattagt
gcggttgctgttcctggacctaggggtgaacctggccgacctggagatataggtcgtccg
ggagatgctggatttccaggtgagcctggatttccgggaattccagggcctccaggacca
ccaggacctatacctgatgtatcaatgtactatcaacagttggctttgtctcaagcaaat
caagataaaggaccaacgggagcagcagctcctttatatggccctgaagcttatttacaa
atgcaaactggtcctattggaccacgtggtccaccaggcccacctggaccacctgggccg
caaggttttcaaggaatgcgaggagaatctggtgaacctggaccttcaggtcctccggga
acgccaggtcccagaggattatccggtttacctggaaaggatggtaacatcggcgaagac
ggagaacctggtcctccaggatcagttggtccagccggtcctagaggcttgccaggaatg
cctggtcttcctggtgtgaaaggacatcgaggttttccaggattggatggcgcaaaagga
gaacaaggtgtatctggcgagaaagggtccatgggtgcacctggcctgatgggacctata
ggtccgatgggccctgcaggtccacgcggtgaaagaggtagagaaggtcctccaggacct
ccgggaattagaggtgtggatggaattgttggacctcctgggcaacctggtgcactaggt
aaaccaggttctcctggctttccaggtaatccaggtgcaaaaggagatcaaggagcacaa
ggaccaaaaggaagtcaaggcatacaaggccctcgaggagaaaccggtcgtcctggacaa
cctggtgaatcaggaccacagggaccccagggaaaagatggaatacctggagaaaaagga
aatatgggagcacctggtttagttggtgctcctggttttcctggaactcgaggacaacct
ggaatacctggcaatcctggcattccggggacgaagggcatgcctggacttcctggtgaa
agaggatttaaaggtgacagtggaggtaaaggtgatacaggtacaccaggaccacgtggt
ttacctggacctcctggaaatgagggtaaacgagggaaaagaggaatgcgcggtccaatt
ggtgcccccggtcctactggagagcgcggagcatcaggtgcaccgggtcttccaggactc
gatggtcccgtgggacccaaaggtcaatctggagatcgtggaccaactggaccaatggga
ctaaaaggagctgcaggagatcttggtcgtccaggaccaccgggtttacagggtacccgt
ggattaatgggtcgccctggtgctcctgggaaactaggaaatccaggagaacgaggaatt
caaggtgctgatggaaaaccaggtgaacaaggcccacctggattacaaggtttgcctgga
ccaataggtcttccaggagaaaagggatatccgggcgagactggaaaagctggtgaacca
ggaaatcctggaccacctggtcctagaggtgatacaggaaaagaaggagccccaggtcct
caaggttcacctggaccatcaggaacagatggggaacggggagctccagggtctccaggt
cctagaggttttcagggttttccaggtgctactggtaatccaggaacaccaggaaaagat
ggagaaccaggtgttcaaggaccacccggcccatcaggtgcacctggaaatagaggtgaa
cgaggatttcccggtgaaagaggtataccaggagcatcaggattaacaggaccaagagga
gaaccaggtgtacaaggattagatggacctcctggattacctggagaaaaaggagataaa
ggaatttcaggaccacctggattattgggactgcctggtttacggggaattccaggagaa
tcgggtccaaaaggagaaagaggatctagtggaccacctggtcctgaagggcctccaggg
cggattggagaacgtggaccgcaaggtcaaattggcccgccaggtccaccaggtgaacca
gcggaacgaggtgatcctggtttacctggacctccaggagaagtaggtgcttctggtaat
ccaggagagagaggaccccaaggattacaaggattgcaaggctttccaggacaacaagga
cttattggtttaccaggattaaagggcgaccgtggttatccaggtctaaaaggagatcaa
ggaaatcctggttcacctggtagtccaggtgaaactgggccacaaggtctaattggtttg
acgggagctaaaggagtacgaggtgaaccaggtattagaggagagcctggtattatggga
ccaccaggagtaccgggaatcattggtgcaacaggtccatcaggtgcaccaggaccacca
ggttcacctggactaccaggtagtaaaggtaatattggagaagcaggacgacctgggagt
cctggacccattggaagtccaggttcacctggtgcagatggaaacaaaggagagagtggt
tctcaaggactaccgggtgctcctggacctcaaggtcctcaaggttctcctggtgaaaga
ggattacctggtttaccgggtccttttggaccaataggtagtaaaggagtacgaggagcg
cctggtgaaactggcatacctgggaaacctggaacagaaggtccacctggaccacctgga
caaattggaccaattggaccacctggaccaccaggagaaattggagcagaaggtccaact
ggtaaacctggaccacctggaatagcaggtcgtcttggagataaaggaccaccaggagcg
gtaggacagacaggattgcccggtcctcctggtttacctggatcacatggtcaagcaggt
cctccaggaccagctggagaaagaggaccaaaaggcgaaacaggaccacaaggcgtagaa
gggcaacaaggacctagaggaaaaccaggaccgataggattagaaggccctaaaggtgac
cgtggagaagaaggccaaaaaggtgtgaaaggtcatagaggatttactggtttgccaggc
ctacctgggcctactgggttgccaggagagaaaggaataccaggatttcctggattacct
ggcaaagatggtgaacctggacttagaggtagtcctggacgagatggtaatcctggaata
attggactaactggtaatccaggaccaaaaggtcctccaggtgaagaaggtcgtcatggt
ccacctggtcctcctggtcctccaggacctccaggtccacccggtgaacttggtttggga
tatgatgctgcttctttagctgcccttttaggacaaggtcaaactaaaggaccagatcca
ttagttggtgatgaaccacctagaatttttagtcaagatatgacagaagaagaaaggaag
gaactcattttgaaggcatacaaacaattgaaatcatcatttcagaaatttataaggcca
gatggtaaaaaaaattcaccggccaaaacctgtagagacctttatactgcttatccggat
aaactctctggagaatattgggtggatcccaatgaaggtgatgcaagagatgcaatttta
gtgtattgtgatgctaagaaacgtgcaacatgtttattaccgagtccagtacgttcccca
gaaatcaagtatattactgatcaaccagaaacttggttaagcgaaatagaagatggaatg
aagattacgtataaagcagacagtaatcaaattggtttcttacaacttctgtcaacacgt
gcataccaaaatatgacatatcattgcaaaaatagcataggctattttgattctgaacaa
aagacatacagaaaaggtatgaaattcttaacttggaatgatgtggaattaatgccacgt
ggaaatcaacggttaagatatgacatgataattgatgaatgcaaagtatacaacggggaa
tggggcaagacaacaatttcatatcaaactgataaacctgtaagattgcctataatagat
gtggctttgagagatattggaaactcagatcagagcttttctattgaaattggtattgtt
tgttatgaataa
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integrated database retrieval system
