Fusarium venenatum: FVRRES_01992
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Entry
FVRRES_01992 CDS
T09539
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fvn
Fusarium venenatum
Pathway
fvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FVRRES_01992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvn03019
]
FVRRES_01992
03041 Spliceosome [BR:
fvn03041
]
FVRRES_01992
03009 Ribosome biogenesis [BR:
fvn03009
]
FVRRES_01992
03016 Transfer RNA biogenesis [BR:
fvn03016
]
FVRRES_01992
Enzymes [BR:
fvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FVRRES_01992
Messenger RNA biogenesis [BR:
fvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FVRRES_01992
Spliceosome [BR:
fvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
FVRRES_01992
Complex C
U4/U6.U5 tri-SnRNP related factors
FVRRES_01992
Ribosome biogenesis [BR:
fvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
FVRRES_01992
Transfer RNA biogenesis [BR:
fvn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FVRRES_01992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
AAA_22
ATPase_2
nSTAND3
Glyco_hydro_65C
Motif
Other DBs
NCBI-GeneID:
37253636
NCBI-ProteinID:
XP_025589200
LinkDB
All DBs
Position
I:5668144..5671480
Genome browser
AA seq
1095 aa
AA seq
DB search
MDEMFDVFEGKVEAPSASEDETVSQRNRKGDKTKKRKANAINGENGDAAKSEDVDMDNTT
EESKDEASSDDESSSESASPQDTKRRKKEDGVAPVMTDTFQTAESREVAGAATFTEQDSS
LVLSHNIQHQVALPPDLDYEYVPLSEHKAPDQPARTWNFKLDPFQSLSVASIEREESVLV
SAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFESIFGDVGLMTGDVTIN
PTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRY
VFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKSNFN
EQNFNKVMQEVEEKKGADPNDPTARQKGKGKNKKTNKGGADNGSDIAKIIRMTIKKKFNP
VIVFNFSKRECENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLL
ERGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVK
RRPLTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYN
MILNLLRIEAISPEYMLERCFHQFQNAASVPSLEKELMSLQQERDSTSIADESTVKDYYQ
IRQQLSAYTRDMRTVIQHPNYSISYLQPGRLVQIYNPKDENETIAGNGTDFGWGVIVNQT
PRRAPKLNEPEYIPQEAHVIDVLLPISRSSADFHPGQPAEEMPPGIKPCNDDEDIKFAVV
PCLLTCIKAISQIRLFLPKEGLKSDGDKDTLTKSLMEVKRRFPDGLPVLDPIENMEITDD
SFKKLLRKIEVLESRLLANPLHLSPLLPSLWDQYHAKVKLTEKVKETKKSIAKAYSIAQM
DELKSRKRVLRRLGFINDSEVVQLKARVACEVSSTEGHELLLSELLFDRFFNELTPEMCA
AVMSCFIFDEKVEAPALKEELQKPYREIQAKARIIAKVSQECKLDVNEEEYAQKLKWQLM
ETVYTWAQGRPFVEICKMTNVYEGSLIRLFRRLEELLRQMAQAAKVMGNEDLTKKFEESL
SKIRRDIVAAQSLYL
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggatgagatgtttgatgttttcgagggcaaggtggaggccccaagtgctagcgaggac
gagactgtgtcgcaaagaaaccgcaagggcgacaagacaaagaagagaaaggccaacgcg
ataaacggcgaaaacggcgacgcggcaaagtctgaggatgtcgacatggacaacactacc
gaagaatccaaagatgaggcttcttccgacgacgagtcttcttcggaaagcgccagcccg
caggataccaagaggaggaagaaggaggatggcgtagccccagttatgacagataccttc
cagacggccgagtcaagagaggtcgctggcgcggccacatttacagagcaggattcatct
ctcgttttgtcgcacaacattcaacatcaggttgctttgcccccggatctagactacgaa
tacgtccctctttccgagcacaaggcccccgaccaacccgcacgaacatggaacttcaag
cttgatcctttccagagtctctccgtggcgtccattgagcgcgaggagagtgttcttgtc
tcagcgcatacttctgccggaaagactgtcgtcgccgagtacgctgtcgcgcaatgtttg
aagcgcaaccaaagagtcatctacacaagccctatcaaggccttgagtaaccaaaagtat
cgagatttcgagtccatctttggagacgttggtctcatgactggcgatgttactattaac
cccacagcgagttgcttggtcatgaccactgagattttgcgatccatgttgtatcgaggt
tccgagatcatgcgagaagtcgcctgggtcgtgtttgacgagatccactacatgcgagac
aagacgagaggtgtcgtctgggaggagacaatcatcatgcttcccgacaaggtccgatat
gtcttcctttctgccaccattcccaacgctttccagttcgccgagtggattgccaagatt
catcaccaggcctgtcacgttgtttataccgatttccgaccaaccccccttcagaactac
ttcttccctgccggtggtagtggcgccagacttatcgtcgacgagaagagcaattttaac
gagcaaaacttcaacaaggttatgcaggaggtcgaggagaagaagggcgctgaccccaac
gaccctaccgctcgacagaaaggaaagggcaaaaacaagaagactaacaagggtggtgcg
gataatggctctgatatcgccaagattattcgaatgaccatcaagaagaagtttaaccct
gtcattgtcttcaacttcagcaagcgagagtgcgagaacatggccatgaacatttcctcg
ctcagtttcaacgacgattctgaaaaggccatggttcgcaaggttttccacaatgctatc
gagagtttgtcggagcaggacagggagcttccgcagattatcaacttgttgcctctgttg
gagcgcggtattggtgtccatcactccggtcttctgcccattctcaaggagaccattgag
attctgttccaggagtctttgatcaaggttcttttcgctaccgagaccttctccatcggt
ctcaacatgcctgccaagactgttgttttcacacaagttaccaagtgggatggcgtcaag
aggcgccctcttacttcatccgagtacattcagatggctggacgtgctggtcgtcgtggt
cttgatgctcgtggtattgttatcatgatgattgacgacaagctcgagcctgataccgcc
aaggagattgttaccggacaccaagatcgactcaactctgctttctacctcggctacaac
atgattctcaaccttctccgtatcgaagctatctctcccgaatatatgttggagcgatgt
ttccatcagttccagaatgccgctagcgtcccgtccctggagaaggagttaatgtctttg
cagcaggagcgcgacagcaccagcattgccgatgagtccaccgtcaaggattactaccag
attcgacagcaacttagcgcgtacacgagggatatgagaactgttattcagcaccccaac
tacagtatctcataccttcagcctggccgtctggtacagatctacaaccccaaggacgag
aacgagactatcgctggcaatggaaccgactttggctggggtgttatcgtcaaccagact
cctcgtcgtgcccccaagctgaacgagcccgagtatattccccaagaagctcacgtcatt
gacgttcttcttcctatttccaggtcaagcgcggatttccaccctggacaacccgctgaa
gagatgcctcctggtatcaagccttgcaatgatgacgaagacatcaagtttgctgttgtt
ccttgtctgttgacctgcattaaggcgatcagtcagatccgtctcttccttcccaaggaa
ggcctcaagagtgacggcgacaaggatacactcactaagtccctcatggaggtcaagcgt
cgtttccctgatggtctccctgttctggatcccattgagaacatggagattaccgacgac
tctttcaagaagcttctacgaaagattgaggtcctcgagtcccgactcttggccaaccct
cttcacctttctcctcttctcccctcactgtgggatcagtaccatgcaaaggttaagctc
acagagaaggtcaaggagacaaagaagtctatcgccaaggcatacagcattgctcagatg
gacgagctcaagtcacgcaagcgtgtcctgcgccgtctaggcttcatcaacgactccgag
gtcgttcagctcaaggcccgtgtcgcctgtgaggtttcttccaccgagggtcacgagctt
ctcctttccgagttgctattcgaccgattctttaacgagcttactcctgagatgtgcgct
gccgtcatgagttgctttatcttcgacgagaaggtcgaggcccctgcactcaaggaggag
ctccagaagccttaccgcgagatccaggccaaggcccgaattattgccaaggtcagccag
gagtgcaagcttgacgtcaacgaggaggaatatgcgcagaagcttaagtggcagcttatg
gagacggtttacacatgggcccaaggtcgtccatttgtcgagatttgcaaaatgacaaat
gtctacgaaggctcacttatccgtcttttccgtcgtctggaagagcttctgcgacagatg
gcccaggctgccaaggtcatgggcaacgaggatctgaccaagaagttcgaggagagtctg
tccaagatccgcagagacattgttgccgcccagagtctgtacctataa
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